Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 RNU7-4P-201ENST00000516961 62 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 SNORD19.2-201ENST00000516978 73 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 RNU6-570P-201ENST00000517051 105 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 AC026403.1-201ENST00000518938 295 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 AP003733.2-201ENST00000529409 171 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 AC008011.1-201ENST00000545989 227 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 TRAV32-201ENST00000553993 340 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 CPDP1-201ENST00000579660 283 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 MIR3944-201ENST00000581277 108 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 AL158827.2-201ENST00000602494 330 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 AC008121.1-201ENST00000603244 268 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 AC009779.6-201ENST00000603972 165 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 FTX_2.1-201ENST00000618816 94 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 AC130454.1-201ENST00000622948 401 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 AL691447.3-201ENST00000635020 330 ntBASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CLIP3Q96DZ5 AC006504.1-201ENST00000562493 3666 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 SNORA71.3-201ENST00000362582 128 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-37P-201ENST00000362692 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-11P-201ENST00000364234 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-7-201ENST00000364784 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-8-201ENST00000365467 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-25P-201ENST00000383873 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-1-201ENST00000383898 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-48P-201ENST00000384161 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-36P-201ENST00000384172 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-4P-201ENST00000384205 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-5P-201ENST00000384238 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 Y_RNA.462-201ENST00000384268 102 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-3P-201ENST00000384314 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-16P-201ENST00000384385 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 SNORA51.11-201ENST00000384442 131 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-15P-201ENST00000384534 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-2-201ENST00000384627 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-29P-201ENST00000384637 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-9-201ENST00000384776 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNA5SP354-201ENST00000391247 136 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RPL21P38-201ENST00000418090 167 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 PIGPP3-201ENST00000425307 415 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 TRIAP1P1-201ENST00000427062 225 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 AC091286.1-201ENST00000431233 461 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 AC006026.2-201ENST00000457376 180 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU7-169P-201ENST00000459456 61 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 HMGB1P35-201ENST00000503360 598 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RN7SKP18-201ENST00000516005 275 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-789P-201ENST00000517105 102 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 OR1M4P-201ENST00000589199 287 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 AP000787.2-201ENST00000604432 568 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 AC123912.5-201ENST00000605470 343 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 RNU6-6P-201ENST00000606623 107 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 MIR1244-1-201ENST00000612829 85 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 MIR1244-3-201ENST00000635744 85 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 MIR1244-2-201ENST00000636449 85 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 MIR1244-4-202ENST00000636813 85 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 U6.104-201ENST00000637979 90 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 AC009093.8-201ENST00000641769 292 ntBASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CLIP3Q96DZ5 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 Y_RNA.180-201ENST00000363867 113 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 RNU4-50P-201ENST00000364361 141 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 RNU1-100P-201ENST00000365255 165 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 RNU6-1027P-201ENST00000383998 107 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 Y_RNA.416-201ENST00000384014 113 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 RNU6-611P-201ENST00000384276 104 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 SNORA48.8-201ENST00000391324 134 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 RPS29P4-201ENST00000414733 161 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 AC096649.2-201ENST00000416186 393 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 AL161651.1-201ENST00000440882 223 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 AL392103.1-201ENST00000447000 198 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 IPO8P1-201ENST00000455509 3109 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 TRBVB-201ENST00000477100 408 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 AC092185.1-201ENST00000491371 97 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 RPS27P26-201ENST00000494583 239 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 AC104619.4-201ENST00000510773 249 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 RNU6-581P-201ENST00000516214 105 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 184.7 ms