Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 MIR892C-201ENST00000516410 77 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 RNA5SP471-201ENST00000516971 106 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 KLKP1-201ENST00000595979 403 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 YPEL5P2-201ENST00000605553 359 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 Z75746.1-201ENST00000440243 2080 ntBASIC3.58□□□□□ -1.84
USP39Q53GS9 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
USP39Q53GS9 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP39Q53GS9 UBE2L2-201ENST00000254302 429 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
USP39Q53GS9 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
USP39Q53GS9 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.57□□□□□ -1.84
USP39Q53GS9 Y_RNA.16-201ENST00000362421 102 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 Y_RNA.27-201ENST00000362540 103 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 SNORD50.1-201ENST00000362987 71 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 Y_RNA.277-201ENST00000364754 102 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 RNU6-700P-201ENST00000391043 107 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 MRPL35P1-201ENST00000404272 572 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP39Q53GS9 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 MTATP6P4-201ENST00000427725 675 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 NDUFB1P1-201ENST00000435191 180 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.57□□□□□ -1.84
USP39Q53GS9 snoU13.4-201ENST00000458916 104 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP39Q53GS9 RPS15AP34-201ENST00000487776 387 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 RPL30P10-201ENST00000488148 337 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 RPS23P5-201ENST00000495419 428 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 RNU6-1338P-201ENST00000516328 91 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 RNU1-103P-201ENST00000516502 125 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 Y_RNA.713-201ENST00000517013 96 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 RNU6-1212P-201ENST00000517023 104 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 RNU6-1315P-201ENST00000517187 99 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.57□□□□□ -1.84
USP39Q53GS9 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.57□□□□□ -1.84
USP39Q53GS9 MIR4643-201ENST00000577473 78 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 MIR1273C-201ENST00000578669 77 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.57□□□□□ -1.84
USP39Q53GS9 MIR3133-201ENST00000583157 78 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 AC098826.3-201ENST00000603823 466 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 AC009314.1-201ENST00000603871 304 ntBASIC3.57□□□□□ -1.84
USP39Q53GS9 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP39Q53GS9 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP39Q53GS9 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
USP39Q53GS9 MIR423-201ENST00000362201 94 ntBASIC3.56□□□□□ -1.84
USP39Q53GS9 Y_RNA.200-201ENST00000364018 102 ntBASIC3.56□□□□□ -1.84
USP39Q53GS9 SNORD56-201ENST00000413522 71 ntBASIC3.56□□□□□ -1.84
USP39Q53GS9 AL592148.1-201ENST00000413568 445 ntBASIC3.56□□□□□ -1.84
USP39Q53GS9 AC002075.2-201ENST00000425207 252 ntBASIC3.56□□□□□ -1.84
USP39Q53GS9 AC079354.2-201ENST00000453523 154 ntBASIC3.56□□□□□ -1.84
USP39Q53GS9 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.56□□□□□ -1.84
USP39Q53GS9 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.56□□□□□ -1.84
USP39Q53GS9 AL121603.1-201ENST00000553815 142 ntBASIC3.56□□□□□ -1.84
USP39Q53GS9 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.56□□□□□ -1.84
USP39Q53GS9 AL157871.3-201ENST00000557231 293 ntBASIC3.56□□□□□ -1.84
USP39Q53GS9 MIR4300-201ENST00000581016 96 ntBASIC3.56□□□□□ -1.84
USP39Q53GS9 AC012493.2-201ENST00000595083 291 ntBASIC3.56□□□□□ -1.84
USP39Q53GS9 AC009318.2-201ENST00000610917 651 ntBASIC3.56□□□□□ -1.84
USP39Q53GS9 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.56□□□□□ -1.84
USP39Q53GS9 U4.6-201ENST00000621618 127 ntBASIC3.56□□□□□ -1.84
USP39Q53GS9 AC118273.1-201ENST00000525324 3006 ntBASIC3.56□□□□□ -1.84
USP39Q53GS9 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
USP39Q53GS9 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
USP39Q53GS9 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
USP39Q53GS9 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-545P-201ENST00000362681 104 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-37P-201ENST00000362692 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 Y_RNA.54-201ENST00000362766 105 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 SNORD81.1-201ENST00000363064 77 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-11P-201ENST00000364234 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-512P-201ENST00000364438 103 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-7-201ENST00000364784 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-283P-201ENST00000364788 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-8-201ENST00000365467 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-25P-201ENST00000383873 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-1-201ENST00000383898 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-48P-201ENST00000384161 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-36P-201ENST00000384172 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-4P-201ENST00000384205 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-5P-201ENST00000384238 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-3P-201ENST00000384314 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-16P-201ENST00000384385 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-125P-201ENST00000384505 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-15P-201ENST00000384534 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-2-201ENST00000384627 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-29P-201ENST00000384637 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-9-201ENST00000384776 107 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 MIR521-1-201ENST00000384902 87 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 SNORD17-201ENST00000390930 237 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 SNORA48.5-201ENST00000391143 135 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 MIR1298-201ENST00000408783 112 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RHEBP3-201ENST00000411920 351 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.55□□□□□ -1.84
USP39Q53GS9 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.55□□□□□ -1.84
USP39Q53GS9 RPL23AP22-201ENST00000437556 453 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 AL138752.1-201ENST00000452964 351 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 AC087588.1-201ENST00000462203 316 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 AC087190.1-201ENST00000484462 480 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 AC107032.1-201ENST00000485945 480 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 AL359273.1-201ENST00000510918 627 ntBASIC3.55□□□□□ -1.84
USP39Q53GS9 RNU6-6P-201ENST00000606623 107 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms