Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.42□□□□□ -2.02
PDLIM3Q53GG5 PRDX4P1-201ENST00000507189 574 ntBASIC2.42□□□□□ -2.02
PDLIM3Q53GG5 AK3P2-201ENST00000507976 429 ntBASIC2.42□□□□□ -2.02
PDLIM3Q53GG5 RNU6-377P-201ENST00000515965 102 ntBASIC2.42□□□□□ -2.02
PDLIM3Q53GG5 SNORA31.6-201ENST00000516241 130 ntBASIC2.42□□□□□ -2.02
PDLIM3Q53GG5 RNU6-1069P-201ENST00000516612 133 ntBASIC2.42□□□□□ -2.02
PDLIM3Q53GG5 AC023824.2-201ENST00000566185 400 ntBASIC2.42□□□□□ -2.02
PDLIM3Q53GG5 AC011712.1-201ENST00000588959 234 ntBASIC2.42□□□□□ -2.02
PDLIM3Q53GG5 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC2.42□□□□□ -2.02
PDLIM3Q53GG5 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.42□□□□□ -2.02
PDLIM3Q53GG5 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.42□□□□□ -2.02
PDLIM3Q53GG5 CBX3P1-201ENST00000325243 554 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 RNU6-942P-201ENST00000363002 107 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 Y_RNA.100-201ENST00000363141 102 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 RNU6-1083P-201ENST00000384022 107 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 RNU6-1072P-201ENST00000384703 107 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 RNU6-443P-201ENST00000384780 107 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 RNA5SP118-201ENST00000410385 109 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 AL365400.1-201ENST00000431854 640 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 RPL7P12-201ENST00000446719 750 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 RNU7-138P-201ENST00000459479 64 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 MED28P2-201ENST00000475771 317 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 FAM206BP-201ENST00000510179 541 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 RNU4-49P-201ENST00000516080 140 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 RNA5SP24-201ENST00000516478 95 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 AC026464.5-201ENST00000562497 722 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 AP001094.1-201ENST00000579805 193 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 MIR3942-201ENST00000585264 109 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 AC018638.8-201ENST00000588755 281 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 AL670379.10-201ENST00000604330 253 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 AL670379.9-201ENST00000605428 253 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 AC025754.2-201ENST00000606491 432 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 AC090115.4-201ENST00000609970 188 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 AC009248.2-201ENST00000619826 254 ntBASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
PDLIM3Q53GG5 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
PDLIM3Q53GG5 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
PDLIM3Q53GG5 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.4□□□□□ -2.02
PDLIM3Q53GG5 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
PDLIM3Q53GG5 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.4□□□□□ -2.02
PDLIM3Q53GG5 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
PDLIM3Q53GG5 RBBP8P1-201ENST00000449447 1844 ntBASIC2.4□□□□□ -2.02
PDLIM3Q53GG5 MTND4P27-201ENST00000450813 1354 ntBASIC2.4□□□□□ -2.02
PDLIM3Q53GG5 RPL9P7-201ENST00000330965 580 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 RNU6-254P-201ENST00000363377 107 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 SNORD113-7-201ENST00000363762 77 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 SNORA38-201ENST00000363946 132 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 RNU6-831P-201ENST00000384548 107 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 MIR218-1-201ENST00000384999 110 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AL590004.2-201ENST00000404787 371 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 USP9YP20-201ENST00000419224 558 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AL139132.1-201ENST00000431587 344 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 NDUFA5P4-201ENST00000436704 385 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AL135938.1-201ENST00000443141 297 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AL441985.1-201ENST00000457727 251 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 RNU7-26P-201ENST00000458980 63 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AC112771.1-201ENST00000463581 102 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 RPL30P12-201ENST00000474666 353 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 RPS27AP9-201ENST00000477681 438 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 RPL7P43-201ENST00000478876 753 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AC090096.1-201ENST00000489168 390 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AC026801.1-201ENST00000497178 464 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 TRBVA-201ENST00000498804 316 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AC116353.2-201ENST00000505332 712 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 RN7SKP132-201ENST00000516001 208 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 RNU1-104P-201ENST00000517280 175 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AC087854.1-201ENST00000519706 414 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AP005597.4-201ENST00000526762 229 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AC243972.3-201ENST00000539655 198 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 PSMA3P-201ENST00000555485 635 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AL391813.1-201ENST00000603098 260 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AC064836.2-201ENST00000609491 462 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AC007318.2-201ENST00000620999 243 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 RMST_7.1-201ENST00000621935 268 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AC138627.2-201ENST00000624202 601 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 AC064859.1-201ENST00000624741 174 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.4□□□□□ -2.03
PDLIM3Q53GG5 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 Y_RNA.40-201ENST00000362645 93 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 RNA5SP393-201ENST00000363423 117 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 Y_RNA.164-201ENST00000363709 102 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 Y_RNA.414-201ENST00000384011 101 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 Y_RNA.466-201ENST00000384294 113 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 Y_RNA.530-201ENST00000384587 101 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 MIR181B1-201ENST00000385240 110 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 AL079342.1-201ENST00000401460 267 ntBASIC2.39□□□□□ -2.03
PDLIM3Q53GG5 RNU6-293P-201ENST00000411259 106 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms