Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 U4.7-201ENST00000638126 106 ntBASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.08□□□□□ -2.08
CCDC40Q4G0X9 RNU6-944P-201ENST00000364023 107 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 Y_RNA.324-201ENST00000365165 102 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 MIR518A2-201ENST00000384966 87 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 SNORA40.19-201ENST00000390846 128 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 RNU4-46P-201ENST00000410818 138 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 AL591043.1-201ENST00000432461 424 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 KATNBL1P3-201ENST00000443475 909 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 RPL39P29-201ENST00000447779 157 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 AL137159.1-201ENST00000452808 512 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 RN7SKP256-201ENST00000517201 314 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 MIR4703-201ENST00000577728 79 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 AC078795.2-201ENST00000602835 1252 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 AL590229.1-201ENST00000603497 542 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 AL136363.2-201ENST00000604173 851 ntBASIC2.07□□□□□ -2.08
CCDC40Q4G0X9 AC009487.4-201ENST00000624969 3585 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 snoU2_19.1-201ENST00000362361 80 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 RNU6-527P-201ENST00000363425 104 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 RNU6-546P-201ENST00000383991 107 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 SNORA70B-201ENST00000384210 135 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 RNA5SP450-201ENST00000411206 102 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 RN7SKP142-201ENST00000411236 328 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 RN7SKP192-201ENST00000411291 327 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 MTND1P27-201ENST00000451117 902 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AC022364.2-201ENST00000457963 554 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AC006512.1-201ENST00000468816 291 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 RPL23AP42-201ENST00000471152 471 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 RPL30P1-201ENST00000488676 339 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 MIR4299-201ENST00000577899 72 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AC091135.1-201ENST00000585943 307 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AC040904.1-201ENST00000590850 223 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AC099842.1-201ENST00000619919 596 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AC009161.2-201ENST00000624626 138 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AL354685.2-201ENST00000448218 1447 ntBASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.06□□□□□ -2.08
CCDC40Q4G0X9 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-37P-201ENST00000362692 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-11P-201ENST00000364234 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-25P-201ENST00000383873 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-1-201ENST00000383898 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-48P-201ENST00000384161 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-36P-201ENST00000384172 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-4P-201ENST00000384205 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-5P-201ENST00000384238 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-3P-201ENST00000384314 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-16P-201ENST00000384385 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-15P-201ENST00000384534 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-2-201ENST00000384627 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-29P-201ENST00000384637 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-9-201ENST00000384776 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-33P-201ENST00000384793 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 GSTA9P-201ENST00000406231 611 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 HMGN2P19-201ENST00000425149 265 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 USP9YP18-201ENST00000425912 695 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 MTND1P18-201ENST00000448191 573 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AL122001.1-201ENST00000457027 370 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 BET1P1-201ENST00000482276 359 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AC092436.1-201ENST00000506450 503 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU2-44P-201ENST00000516795 194 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 HSPE1P18-201ENST00000517602 280 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AP002963.1-201ENST00000530590 184 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 MIR4648-201ENST00000580107 72 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AC243960.4-201ENST00000600532 288 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AC121247.2-201ENST00000604776 136 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 RNU6-6P-201ENST00000606623 107 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AC004908.3-201ENST00000610248 625 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AC073114.1-201ENST00000612027 490 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 AL132822.1-201ENST00000617063 513 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 uc_338.11-201ENST00000619132 160 ntBASIC2.05□□□□□ -2.08
CCDC40Q4G0X9 SNORA16.1-201ENST00000364597 132 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 141.9 ms