Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC092574.1-201ENST00000609771 420 ntBASIC0.69□□□□□ -2.3
CHD3Q12873 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
CHD3Q12873 Y_RNA.234-201ENST00000364409 97 ntBASIC0.68□□□□□ -2.3
CHD3Q12873 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC0.68□□□□□ -2.3
CHD3Q12873 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC0.68□□□□□ -2.3
CHD3Q12873 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC0.68□□□□□ -2.3
CHD3Q12873 DUXAP8-207ENST00000456786 622 ntBASIC0.68□□□□□ -2.3
CHD3Q12873 snoU13.14-201ENST00000459372 104 ntBASIC0.68□□□□□ -2.3
CHD3Q12873 RPL30P7-201ENST00000479312 323 ntBASIC0.68□□□□□ -2.3
CHD3Q12873 MTND1P3-201ENST00000484956 952 ntBASIC0.68□□□□□ -2.3
CHD3Q12873 AC108729.1-201ENST00000487812 947 ntBASIC0.68□□□□□ -2.3
CHD3Q12873 AP003034.1-201ENST00000534621 422 ntBASIC0.68□□□□□ -2.3
CHD3Q12873 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.68□□□□□ -2.3
CHD3Q12873 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC0.68□□□□□ -2.3
CHD3Q12873 AC005776.1-201ENST00000603164 290 ntBASIC0.68□□□□□ -2.3
CHD3Q12873 AL031775.1-201ENST00000607014 887 ntBASIC0.68□□□□□ -2.3
CHD3Q12873 AL354696.1-201ENST00000614652 497 ntBASIC0.68□□□□□ -2.3
CHD3Q12873 AP000943.4-201ENST00000622912 357 ntBASIC0.68□□□□□ -2.3
CHD3Q12873 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.68□□□□□ -2.3
CHD3Q12873 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
CHD3Q12873 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
CHD3Q12873 SMIM11P1-201ENST00000369586 178 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 Y_RNA.597-201ENST00000410463 100 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 RNU2-62P-201ENST00000410868 191 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.67□□□□□ -2.3
CHD3Q12873 MTND1P16-201ENST00000465177 898 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 HMGB1P28-201ENST00000507778 552 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 RNU6-351P-201ENST00000516097 100 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 RNU6-390P-201ENST00000516259 103 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 RNU6-229P-201ENST00000516614 102 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 AP003049.1-201ENST00000529418 457 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC0.67□□□□□ -2.3
CHD3Q12873 AC021171.1-201ENST00000603137 706 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 AC174048.1-201ENST00000603389 144 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 AC013244.2-201ENST00000603396 103 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 AC124016.2-201ENST00000610058 665 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 AC093875.1-201ENST00000623688 504 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 SCARNA4-202ENST00000625402 129 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 AL391516.1-201ENST00000554380 2449 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
CHD3Q12873 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
CHD3Q12873 AL589826.1-201ENST00000340697 249 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 RNU6-862P-201ENST00000362804 105 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 RNU1-36P-201ENST00000365130 165 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 RNU6-1235P-201ENST00000384559 107 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 MIR29B2-201ENST00000385055 81 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
CHD3Q12873 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.67□□□□□ -2.3
CHD3Q12873 RNU6-498P-201ENST00000459468 107 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.67□□□□□ -2.3
CHD3Q12873 MTCO3P9-201ENST00000506989 781 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC0.67□□□□□ -2.3
CHD3Q12873 AC023538.1-201ENST00000534576 736 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 AC243829.6-201ENST00000612652 106 ntBASIC0.67□□□□□ -2.3
CHD3Q12873 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.67□□□□□ -2.3
CHD3Q12873 RNU6-1010P-201ENST00000362757 107 ntBASIC0.66□□□□□ -2.3
CHD3Q12873 RNU6-438P-201ENST00000365561 103 ntBASIC0.66□□□□□ -2.3
CHD3Q12873 SNORA75B-201ENST00000384053 137 ntBASIC0.66□□□□□ -2.3
CHD3Q12873 AC245047.4-201ENST00000433189 144 ntBASIC0.66□□□□□ -2.3
CHD3Q12873 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC0.66□□□□□ -2.3
CHD3Q12873 AC069257.2-201ENST00000441819 155 ntBASIC0.66□□□□□ -2.3
CHD3Q12873 AL606517.1-201ENST00000446914 387 ntBASIC0.66□□□□□ -2.3
CHD3Q12873 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC0.66□□□□□ -2.3
CHD3Q12873 RPL30P1-201ENST00000488676 339 ntBASIC0.66□□□□□ -2.3
CHD3Q12873 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC0.66□□□□□ -2.3
CHD3Q12873 AC114981.1-201ENST00000503897 678 ntBASIC0.66□□□□□ -2.3
CHD3Q12873 MTCO3P28-201ENST00000513351 515 ntBASIC0.66□□□□□ -2.3
CHD3Q12873 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC0.66□□□□□ -2.3
CHD3Q12873 AC087897.1-201ENST00000550134 156 ntBASIC0.66□□□□□ -2.3
CHD3Q12873 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.66□□□□□ -2.3
CHD3Q12873 MZT1P2-201ENST00000604387 248 ntBASIC0.66□□□□□ -2.3
CHD3Q12873 MIR8065-201ENST00000620577 100 ntBASIC0.66□□□□□ -2.3
CHD3Q12873 AC009033.1-201ENST00000624279 431 ntBASIC0.66□□□□□ -2.3
CHD3Q12873 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.66□□□□□ -2.3
CHD3Q12873 Y_RNA.332-201ENST00000365271 113 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 MIR194-1-201ENST00000384892 85 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 AL603865.2-201ENST00000401679 213 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC0.65□□□□□ -2.3
CHD3Q12873 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.65□□□□□ -2.3
CHD3Q12873 MTCO1P27-201ENST00000448269 226 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.65□□□□□ -2.3
CHD3Q12873 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC0.65□□□□□ -2.3
CHD3Q12873 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC0.65□□□□□ -2.3
CHD3Q12873 RNA5SP121-201ENST00000516537 101 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 RNU6-143P-201ENST00000516942 93 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.65□□□□□ -2.3
CHD3Q12873 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.65□□□□□ -2.3
CHD3Q12873 BNIP3P31-201ENST00000604515 566 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 AL161798.1-201ENST00000604630 131 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 MIR15A-201ENST00000607334 83 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 AC093788.1-201ENST00000609356 927 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 AC078880.5-201ENST00000617845 421 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 AL158163.2-201ENST00000619110 700 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 U1.36-201ENST00000620684 176 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 AC112204.3-201ENST00000623822 332 ntBASIC0.65□□□□□ -2.3
CHD3Q12873 AC100821.1-201ENST00000523153 2479 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
CHD3Q12873 RNU6-792P-201ENST00000363490 107 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms