Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL4A3Q01955 AL592437.2-201ENST00000421655 2434 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 RNU1-35P-201ENST00000362782 153 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 Y_RNA.518-201ENST00000384552 113 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 Y_RNA.539-201ENST00000384635 107 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 MIR190B-201ENST00000401119 79 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 RHEBP3-201ENST00000411920 351 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 MYL8P-204ENST00000431574 518 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.31□□□□□ -1.88
COL4A3Q01955 AL603825.1-201ENST00000438481 80 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 AC010095.1-201ENST00000443543 144 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.31□□□□□ -1.88
COL4A3Q01955 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.31□□□□□ -1.88
COL4A3Q01955 AK3P2-201ENST00000507976 429 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.31□□□□□ -1.88
COL4A3Q01955 RNU6-377P-201ENST00000515965 102 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 RNA5SP356-201ENST00000515972 94 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 Y_RNA.700-201ENST00000516806 100 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 Y_RNA.713-201ENST00000517013 96 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.31□□□□□ -1.88
COL4A3Q01955 AL442163.3-201ENST00000554110 156 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.31□□□□□ -1.88
COL4A3Q01955 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.31□□□□□ -1.88
COL4A3Q01955 AC008121.1-201ENST00000603244 268 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 RNA5SP108-201ENST00000605921 117 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
COL4A3Q01955 AL360181.4-201ENST00000621752 134 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 AC090617.7-201ENST00000623952 126 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.31□□□□□ -1.88
COL4A3Q01955 AC243829.7-201ENST00000633081 225 ntBASIC3.31□□□□□ -1.88
COL4A3Q01955 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL4A3Q01955 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL4A3Q01955 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL4A3Q01955 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
COL4A3Q01955 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC3.31□□□□□ -1.88
COL4A3Q01955 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.31□□□□□ -1.88
COL4A3Q01955 AC007496.3-201ENST00000624987 3443 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.3□□□□□ -1.88
COL4A3Q01955 Y_RNA.237-201ENST00000364439 102 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 SNORD115-46-201ENST00000390982 71 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 RNU2-33P-201ENST00000410344 192 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 AL356867.1-201ENST00000429623 299 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 HIGD1AP2-201ENST00000446367 280 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 RPL30P10-201ENST00000488148 337 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 AL359273.1-201ENST00000510918 627 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.3□□□□□ -1.88
COL4A3Q01955 RNU7-175P-201ENST00000515915 61 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 RNU1-41P-201ENST00000516161 162 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 RNU1-48P-201ENST00000516400 162 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 RNU6-789P-201ENST00000517105 102 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A3Q01955 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.3□□□□□ -1.88
COL4A3Q01955 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A3Q01955 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 AC009318.2-201ENST00000610917 651 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 AL450472.1-202ENST00000637286 180 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
COL4A3Q01955 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
COL4A3Q01955 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL4A3Q01955 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL4A3Q01955 NEAT1-202ENST00000501122 22743 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.3□□□□□ -1.88
COL4A3Q01955 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.3□□□□□ -1.88
COL4A3Q01955 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL4A3Q01955 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL4A3Q01955 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
COL4A3Q01955 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC3.3□□□□□ -1.88
COL4A3Q01955 MIR30E-201ENST00000362104 92 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 Y_RNA.358-201ENST00000365491 99 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 Y_RNA.439-201ENST00000384119 94 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 RNU4-47P-201ENST00000410876 114 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 RNU2-14P-201ENST00000411053 191 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 SDAD1P3-201ENST00000427380 333 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.3□□□□□ -1.88
COL4A3Q01955 FABP5P15-201ENST00000453566 214 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC3.3□□□□□ -1.88
COL4A3Q01955 SNORA31.6-201ENST00000516241 130 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 RNU5B-3P-201ENST00000516601 115 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 RNU6-612P-201ENST00000516909 102 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 RNA5SP290-201ENST00000517133 127 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 MIR2355-201ENST00000517199 87 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 SNORA81.3-201ENST00000517283 198 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 GTF3AP2-201ENST00000557014 266 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 MIR3921-201ENST00000577308 85 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 IGHVIII-44-202ENST00000636235 289 ntBASIC3.3□□□□□ -1.88
COL4A3Q01955 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 AL139811.1-201ENST00000424779 2299 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.29□□□□□ -1.88
COL4A3Q01955 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
COL4A3Q01955 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
COL4A3Q01955 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL4A3Q01955 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL4A3Q01955 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL4A3Q01955 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL4A3Q01955 RNU4-82P-201ENST00000362443 140 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 Y_RNA.40-201ENST00000362645 93 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 RNU6-428P-201ENST00000362942 107 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 U3.6-201ENST00000363622 211 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 Y_RNA.352-201ENST00000365439 102 ntBASIC3.29□□□□□ -1.88
COL4A3Q01955 Y_RNA.405-201ENST00000383979 100 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms