Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC117454.1-201ENST00000491120 168 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 TRBVA-201ENST00000498804 316 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 AC009646.1-201ENST00000510455 318 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.51□□□□□ -2.33
FOXA3P55318 AC027338.1-201ENST00000514840 825 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 RNU5A-4P-201ENST00000516588 111 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 RNU6-197P-201ENST00000516680 100 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 RNA5SP503-201ENST00000517047 117 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC0.51□□□□□ -2.33
FOXA3P55318 AC004817.2-201ENST00000561794 651 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.51□□□□□ -2.33
FOXA3P55318 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.51□□□□□ -2.33
FOXA3P55318 MIR3664-201ENST00000579074 99 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 AC098848.2-201ENST00000588023 330 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 AC090578.1-201ENST00000604955 591 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 AC099785.1-201ENST00000605697 437 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 AP002802.2-201ENST00000605877 235 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 AL365434.2-201ENST00000607979 234 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.51□□□□□ -2.33
FOXA3P55318 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC0.51□□□□□ -2.33
FOXA3P55318 MIR6715A-201ENST00000615929 79 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC0.51□□□□□ -2.33
FOXA3P55318 AL158163.2-201ENST00000619110 700 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 AC093875.1-201ENST00000623688 504 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 AC006927.2-201ENST00000639256 389 ntBASIC0.51□□□□□ -2.33
FOXA3P55318 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC0.51□□□□□ -2.33
FOXA3P55318 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.5□□□□□ -2.33
FOXA3P55318 RNU6-942P-201ENST00000363002 107 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 SNORD114-27-201ENST00000363766 70 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 RNU6-392P-201ENST00000364926 101 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 MIR194-1-201ENST00000384892 85 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 Y_RNA.578-201ENST00000390903 88 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 RNA5SP390-201ENST00000410191 113 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 MTCO1P17-201ENST00000411522 491 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC0.5□□□□□ -2.33
FOXA3P55318 AL591704.1-201ENST00000432574 275 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.5□□□□□ -2.33
FOXA3P55318 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.5□□□□□ -2.33
FOXA3P55318 AL583843.1-201ENST00000456070 346 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 MTND1P3-201ENST00000484956 952 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC0.5□□□□□ -2.33
FOXA3P55318 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.5□□□□□ -2.33
FOXA3P55318 MIR449C-201ENST00000516047 92 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 RN7SKP265-201ENST00000516448 223 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 RNA5SP490-201ENST00000517141 136 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 RNU6-1315P-201ENST00000517187 99 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 SUMO2P18-201ENST00000518873 252 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.5□□□□□ -2.33
FOXA3P55318 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC0.5□□□□□ -2.33
FOXA3P55318 AC026616.1-201ENST00000523157 525 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.5□□□□□ -2.33
FOXA3P55318 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.5□□□□□ -2.33
FOXA3P55318 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.5□□□□□ -2.33
FOXA3P55318 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.5□□□□□ -2.33
FOXA3P55318 AL391001.1-201ENST00000602747 715 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 snoU13.31-201ENST00000607291 104 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 AC012467.1-201ENST00000607740 256 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 AC130324.3-201ENST00000614165 542 ntBASIC0.5□□□□□ -2.33
FOXA3P55318 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
FOXA3P55318 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
FOXA3P55318 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
FOXA3P55318 RNU6-1080P-201ENST00000383982 107 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 Y_RNA.534-201ENST00000384599 112 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 MIR608-201ENST00000384820 100 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 MIR320C1-201ENST00000408566 88 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.49□□□□□ -2.33
FOXA3P55318 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.49□□□□□ -2.33
FOXA3P55318 AL590556.1-201ENST00000423231 483 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC0.49□□□□□ -2.33
FOXA3P55318 AC004941.2-201ENST00000427009 228 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 AL591043.1-201ENST00000432461 424 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 AC092473.1-201ENST00000441098 221 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 AC244505.5-201ENST00000443639 207 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 AL139824.2-201ENST00000458731 1095 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 RNU6-953P-201ENST00000459154 107 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 AC008837.2-201ENST00000513076 418 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 RNU6-322P-201ENST00000516010 103 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.49□□□□□ -2.33
FOXA3P55318 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC0.49□□□□□ -2.33
FOXA3P55318 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.49□□□□□ -2.33
FOXA3P55318 DEFB108A-201ENST00000530110 222 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 AP000907.2-201ENST00000530827 353 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.49□□□□□ -2.33
FOXA3P55318 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC0.49□□□□□ -2.33
FOXA3P55318 AC104984.5-201ENST00000586878 94 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC0.49□□□□□ -2.33
FOXA3P55318 AC008751.2-201ENST00000597885 980 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 AL590229.1-201ENST00000603497 542 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 AL355816.2-201ENST00000610049 647 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 AC099654.8-201ENST00000637757 681 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 AC010615.1-201ENST00000594254 1764 ntBASIC0.49□□□□□ -2.33
FOXA3P55318 Y_RNA.33-201ENST00000362591 102 ntBASIC0.48□□□□□ -2.33
FOXA3P55318 SNORA75B-201ENST00000384053 137 ntBASIC0.48□□□□□ -2.33
FOXA3P55318 SNORD116-20-201ENST00000384529 92 ntBASIC0.48□□□□□ -2.33
FOXA3P55318 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC0.48□□□□□ -2.33
FOXA3P55318 MIR1305-201ENST00000408300 86 ntBASIC0.48□□□□□ -2.33
FOXA3P55318 MIR1284-201ENST00000408337 120 ntBASIC0.48□□□□□ -2.33
FOXA3P55318 AC092809.3-201ENST00000415453 231 ntBASIC0.48□□□□□ -2.33
FOXA3P55318 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms