Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MIR1267-201ENST00000408723 78 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC0.89□□□□□ -2.27
HLA-DMBP28068 BTF3L4P1-201ENST00000413813 468 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.89□□□□□ -2.27
HLA-DMBP28068 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.89□□□□□ -2.27
HLA-DMBP28068 RPS27P16-201ENST00000425758 201 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 TOMM22P2-201ENST00000430735 237 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AL365400.1-201ENST00000431854 640 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.89□□□□□ -2.27
HLA-DMBP28068 UBE2V1P8-201ENST00000437166 265 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AC244505.5-201ENST00000443639 207 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC0.89□□□□□ -2.27
HLA-DMBP28068 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC0.89□□□□□ -2.27
HLA-DMBP28068 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
HLA-DMBP28068 DUXAP8-207ENST00000456786 622 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AC006026.2-201ENST00000457376 180 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.89□□□□□ -2.27
HLA-DMBP28068 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC0.89□□□□□ -2.27
HLA-DMBP28068 AC130509.1-201ENST00000464158 433 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 RPL26P26-201ENST00000480251 434 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AC093852.1-201ENST00000503587 266 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.89□□□□□ -2.27
HLA-DMBP28068 AC016550.1-201ENST00000505348 785 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.89□□□□□ -2.27
HLA-DMBP28068 Y_RNA.687-201ENST00000516558 91 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AC091163.3-201ENST00000518269 1144 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AC013828.2-201ENST00000532487 235 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AC023050.2-201ENST00000544968 387 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AL136363.2-201ENST00000604173 851 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AL592221.1-201ENST00000605266 382 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AL121890.5-201ENST00000620848 304 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 AC068205.3-201ENST00000636385 468 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
HLA-DMBP28068 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
HLA-DMBP28068 RNU6-414P-201ENST00000363705 104 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 SNORA4.1-201ENST00000364263 144 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 Y_RNA.226-201ENST00000364337 114 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 RNU4-91P-201ENST00000364778 135 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 SNORD1A-201ENST00000364968 72 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 Y_RNA.332-201ENST00000365271 113 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC0.88□□□□□ -2.27
HLA-DMBP28068 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.88□□□□□ -2.27
HLA-DMBP28068 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC0.88□□□□□ -2.27
HLA-DMBP28068 MTND4P20-201ENST00000424125 869 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.88□□□□□ -2.27
HLA-DMBP28068 C8orf59P1-201ENST00000429930 303 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC0.88□□□□□ -2.27
HLA-DMBP28068 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.88□□□□□ -2.27
HLA-DMBP28068 JTBP1-201ENST00000441314 247 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 RPL30P7-201ENST00000479312 323 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC0.88□□□□□ -2.27
HLA-DMBP28068 RNU2-10P-201ENST00000516375 211 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC0.88□□□□□ -2.27
HLA-DMBP28068 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC0.88□□□□□ -2.27
HLA-DMBP28068 BNIP3P6-201ENST00000549284 499 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
HLA-DMBP28068 AC091135.1-201ENST00000585943 307 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 BNIP3P8-201ENST00000597863 560 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 AL391001.1-201ENST00000602747 715 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 AP000654.2-201ENST00000605633 586 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 AC063943.3-201ENST00000615562 356 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 LINC02555-201ENST00000563933 1951 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 ZNF736P9Y-201ENST00000439586 1345 ntBASIC0.88□□□□□ -2.27
HLA-DMBP28068 RNU6-53P-201ENST00000365367 106 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 MIR499A-201ENST00000384903 122 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 MIR618-201ENST00000385287 98 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 AL357139.1-201ENST00000407792 426 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 MIR1287-201ENST00000408492 90 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 OR6C66P-201ENST00000414917 930 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC0.87□□□□□ -2.27
HLA-DMBP28068 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC0.87□□□□□ -2.27
HLA-DMBP28068 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC0.87□□□□□ -2.27
HLA-DMBP28068 RPL23AP30-201ENST00000432419 501 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 EEF1A1P39-201ENST00000440791 250 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 AC027119.1-201ENST00000440877 241 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 RPS29P28-201ENST00000446439 141 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 HMGN2P18-201ENST00000450680 270 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.87□□□□□ -2.27
HLA-DMBP28068 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.87□□□□□ -2.27
HLA-DMBP28068 AC108078.1-201ENST00000508073 725 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 SNORA3.4-201ENST00000515969 96 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC0.87□□□□□ -2.27
HLA-DMBP28068 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC0.87□□□□□ -2.27
HLA-DMBP28068 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC0.87□□□□□ -2.27
HLA-DMBP28068 MTND3P19-201ENST00000603825 345 ntBASIC0.87□□□□□ -2.27
HLA-DMBP28068 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
HLA-DMBP28068 SNORD32B-201ENST00000364460 84 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 RNU6-384P-201ENST00000364900 104 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC0.86□□□□□ -2.27
HLA-DMBP28068 AL031779.1-201ENST00000415663 330 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 RPS3AP37-201ENST00000419176 745 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 AL589872.1-201ENST00000426602 288 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC0.86□□□□□ -2.27
HLA-DMBP28068 CR769776.1-201ENST00000441254 787 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 AC007969.2-201ENST00000441891 191 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC0.86□□□□□ -2.27
HLA-DMBP28068 Z73417.1-201ENST00000447373 778 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 RPL30P12-201ENST00000474666 353 ntBASIC0.86□□□□□ -2.27
HLA-DMBP28068 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms