Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC025423.5-201ENST00000550230 219 ntBASIC2.58□□□□□ -2
MSH3P20585 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.58□□□□□ -2
MSH3P20585 AC100830.2-201ENST00000581636 240 ntBASIC2.58□□□□□ -2
MSH3P20585 FGF7P1-201ENST00000582820 288 ntBASIC2.58□□□□□ -2
MSH3P20585 OR1M4P-201ENST00000589199 287 ntBASIC2.58□□□□□ -2
MSH3P20585 AC010378.1-201ENST00000619270 362 ntBASIC2.58□□□□□ -2
MSH3P20585 UCA1.1-201ENST00000620952 75 ntBASIC2.58□□□□□ -2
MSH3P20585 SCARNA15.3-201ENST00000626315 122 ntBASIC2.58□□□□□ -2
MSH3P20585 SCARNA4.1-201ENST00000628597 123 ntBASIC2.58□□□□□ -2
MSH3P20585 AC099654.5-201ENST00000636479 350 ntBASIC2.58□□□□□ -2
MSH3P20585 TPTEP1-208ENST00000636884 213 ntBASIC2.58□□□□□ -2
MSH3P20585 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.58□□□□□ -2
MSH3P20585 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
MSH3P20585 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
MSH3P20585 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.58□□□□□ -2
MSH3P20585 CDC27P3-201ENST00000635418 1910 ntBASIC2.58□□□□□ -2
MSH3P20585 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
MSH3P20585 RNU6-942P-201ENST00000363002 107 ntBASIC2.57□□□□□ -2
MSH3P20585 RNU6-1329P-201ENST00000365664 107 ntBASIC2.57□□□□□ -2
MSH3P20585 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
MSH3P20585 SNORD116-11-201ENST00000383882 92 ntBASIC2.57□□□□□ -2
MSH3P20585 RNA5SP210-201ENST00000391034 120 ntBASIC2.57□□□□□ -2
MSH3P20585 RNU2-25P-201ENST00000411041 191 ntBASIC2.57□□□□□ -2
MSH3P20585 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.57□□□□□ -2
MSH3P20585 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.57□□□□□ -2
MSH3P20585 TOMM20P4-201ENST00000427861 435 ntBASIC2.57□□□□□ -2
MSH3P20585 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.57□□□□□ -2
MSH3P20585 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.57□□□□□ -2
MSH3P20585 FGF7P4-201ENST00000509595 295 ntBASIC2.57□□□□□ -2
MSH3P20585 AC113155.1-201ENST00000511141 769 ntBASIC2.57□□□□□ -2
MSH3P20585 AC092436.3-201ENST00000511788 257 ntBASIC2.57□□□□□ -2
MSH3P20585 RNA5SP282-201ENST00000516355 108 ntBASIC2.57□□□□□ -2
MSH3P20585 RNU6-273P-201ENST00000516937 96 ntBASIC2.57□□□□□ -2
MSH3P20585 RNA5SP454-201ENST00000517231 127 ntBASIC2.57□□□□□ -2
MSH3P20585 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.57□□□□□ -2
MSH3P20585 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.57□□□□□ -2
MSH3P20585 RAB11AP2-201ENST00000545905 639 ntBASIC2.57□□□□□ -2
MSH3P20585 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.57□□□□□ -2
MSH3P20585 AC005668.1-201ENST00000571142 476 ntBASIC2.57□□□□□ -2
MSH3P20585 RPS3AP23-202ENST00000574601 686 ntBASIC2.57□□□□□ -2
MSH3P20585 MIR5092-201ENST00000583139 88 ntBASIC2.57□□□□□ -2
MSH3P20585 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.57□□□□□ -2
MSH3P20585 AC060766.3-201ENST00000591442 263 ntBASIC2.57□□□□□ -2
MSH3P20585 AL356575.1-201ENST00000603008 283 ntBASIC2.57□□□□□ -2
MSH3P20585 AC008121.1-201ENST00000603244 268 ntBASIC2.57□□□□□ -2
MSH3P20585 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.57□□□□□ -2
MSH3P20585 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.57□□□□□ -2
MSH3P20585 uc_338.15-201ENST00000615470 191 ntBASIC2.57□□□□□ -2
MSH3P20585 AC009233.1-201ENST00000616477 371 ntBASIC2.57□□□□□ -2
MSH3P20585 SCARNA4-202ENST00000625402 129 ntBASIC2.57□□□□□ -2
MSH3P20585 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
MSH3P20585 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
MSH3P20585 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
MSH3P20585 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
MSH3P20585 RNU6-562P-201ENST00000362731 107 ntBASIC2.56□□□□□ -2
MSH3P20585 RNU6-214P-201ENST00000384130 107 ntBASIC2.56□□□□□ -2
MSH3P20585 SNORD73A-201ENST00000386062 65 ntBASIC2.56□□□□□ -2
MSH3P20585 NCOR1P3-201ENST00000420479 303 ntBASIC2.56□□□□□ -2
MSH3P20585 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.56□□□□□ -2
MSH3P20585 RPS15AP5-201ENST00000436276 388 ntBASIC2.56□□□□□ -2
MSH3P20585 HIGD1AP2-201ENST00000446367 280 ntBASIC2.56□□□□□ -2
MSH3P20585 MTND1P17-201ENST00000448961 204 ntBASIC2.56□□□□□ -2
MSH3P20585 SRIP1-201ENST00000489235 288 ntBASIC2.56□□□□□ -2
MSH3P20585 MTCO1P29-201ENST00000496868 288 ntBASIC2.56□□□□□ -2
MSH3P20585 AC008526.1-201ENST00000509149 338 ntBASIC2.56□□□□□ -2
MSH3P20585 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.56□□□□□ -2
MSH3P20585 Y_RNA.682-201ENST00000516457 100 ntBASIC2.56□□□□□ -2
MSH3P20585 RPPH1-2P-201ENST00000516688 293 ntBASIC2.56□□□□□ -2
MSH3P20585 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.56□□□□□ -2
MSH3P20585 AC022634.1-201ENST00000520765 532 ntBASIC2.56□□□□□ -2
MSH3P20585 COPS8P3-201ENST00000526024 482 ntBASIC2.56□□□□□ -2
MSH3P20585 AC006199.1-201ENST00000548728 219 ntBASIC2.56□□□□□ -2
MSH3P20585 AC026371.1-201ENST00000551867 419 ntBASIC2.56□□□□□ -2
MSH3P20585 AL117336.2-201ENST00000602435 335 ntBASIC2.56□□□□□ -2
MSH3P20585 AC104237.2-201ENST00000612456 443 ntBASIC2.56□□□□□ -2
MSH3P20585 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.56□□□□□ -2
MSH3P20585 AC138627.2-201ENST00000624202 601 ntBASIC2.56□□□□□ -2
MSH3P20585 MIR3199-2-201ENST00000636243 86 ntBASIC2.56□□□□□ -2
MSH3P20585 FO624990.1-201ENST00000636373 85 ntBASIC2.56□□□□□ -2
MSH3P20585 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
MSH3P20585 ADAM3A-203ENST00000461344 2157 ntBASIC2.56□□□□□ -2
MSH3P20585 Y_RNA.339-201ENST00000365325 102 ntBASIC2.55□□□□□ -2
MSH3P20585 DEFA7P-201ENST00000382676 285 ntBASIC2.55□□□□□ -2
MSH3P20585 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.55□□□□□ -2
MSH3P20585 MIR548K-201ENST00000408406 116 ntBASIC2.55□□□□□ -2
MSH3P20585 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.55□□□□□ -2
MSH3P20585 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.55□□□□□ -2
MSH3P20585 AC009296.1-201ENST00000443146 155 ntBASIC2.55□□□□□ -2
MSH3P20585 AC108938.1-201ENST00000451204 136 ntBASIC2.55□□□□□ -2
MSH3P20585 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.55□□□□□ -2
MSH3P20585 AL109933.2-201ENST00000452651 260 ntBASIC2.55□□□□□ -2
MSH3P20585 RPL31P41-201ENST00000477967 372 ntBASIC2.55□□□□□ -2
MSH3P20585 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.55□□□□□ -2
MSH3P20585 AC116655.1-201ENST00000508324 901 ntBASIC2.55□□□□□ -2
MSH3P20585 RNU6-581P-201ENST00000516214 105 ntBASIC2.55□□□□□ -2
MSH3P20585 SNORA31.15-201ENST00000516771 132 ntBASIC2.55□□□□□ -2
MSH3P20585 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.55□□□□□ -2
MSH3P20585 AC243960.4-201ENST00000600532 288 ntBASIC2.55□□□□□ -2
MSH3P20585 C8orf59P2-201ENST00000603441 271 ntBASIC2.55□□□□□ -2
MSH3P20585 ELOCP5-201ENST00000604924 333 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms