Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC026801.1-201ENST00000497178 464 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXC4P09017 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXC4P09017 AC105417.1-201ENST00000514691 285 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 RNU6-123P-201ENST00000516163 102 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 RNU6-875P-201ENST00000516488 106 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 MIR514B-201ENST00000516774 80 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 RNA5SP503-201ENST00000517047 117 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.04□□□□□ -2.08
HOXC4P09017 BTF3P12-201ENST00000519620 469 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
HOXC4P09017 AC023050.3-201ENST00000541142 333 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXC4P09017 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXC4P09017 MTND4P35-201ENST00000604257 1375 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 AC004805.2-201ENST00000605382 482 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 AL357078.3-201ENST00000607528 618 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.04□□□□□ -2.08
HOXC4P09017 U2.15-201ENST00000611544 191 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 U2.16-201ENST00000613119 191 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 U2.12-201ENST00000613778 191 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 U2.20-201ENST00000613956 192 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 AC130324.3-201ENST00000614165 542 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 Y_RNA.804-201ENST00000615262 101 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 U2.9-201ENST00000615427 191 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 U2.11-201ENST00000616345 191 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 U2.2-201ENST00000616535 191 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 U2.3-201ENST00000617785 191 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 U2.19-201ENST00000618602 191 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 RNU2-1-201ENST00000618664 191 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 U2.6-201ENST00000619225 191 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 U2.5-201ENST00000619465 191 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 U2.10-201ENST00000620268 191 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.04□□□□□ -2.08
HOXC4P09017 AC090617.10-201ENST00000624308 134 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 AC009487.4-201ENST00000624969 3585 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.04□□□□□ -2.08
HOXC4P09017 MIR7157-201ENST00000635801 60 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 AC100810.6-201ENST00000638068 285 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 AP000553.5-201ENST00000641933 54 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 OR4G1P-203ENST00000641984 1631 ntBASIC2.04□□□□□ -2.08
HOXC4P09017 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
HOXC4P09017 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.04□□□□□ -2.08
HOXC4P09017 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.03□□□□□ -2.08
HOXC4P09017 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
HOXC4P09017 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
HOXC4P09017 RNU6-288P-201ENST00000363690 104 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 Y_RNA.279-201ENST00000364763 95 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
HOXC4P09017 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
HOXC4P09017 RNU6-38P-201ENST00000384085 107 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 RNU1-52P-201ENST00000384190 164 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
HOXC4P09017 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXC4P09017 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.03□□□□□ -2.08
HOXC4P09017 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.03□□□□□ -2.08
HOXC4P09017 MICF-203ENST00000432679 129 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 HMGN2P3-201ENST00000433603 273 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 HMGN2P5-201ENST00000436882 273 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 NEFMP1-201ENST00000443423 1006 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXC4P09017 AC092001.1-201ENST00000453012 261 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 PMCHL2-203ENST00000457791 237 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 RNU6-333P-201ENST00000459117 107 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 RNU7-180P-201ENST00000459240 63 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXC4P09017 CCDC34P1-201ENST00000507441 517 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 AC104806.1-201ENST00000508720 308 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 AC023141.11-201ENST00000508864 202 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.03□□□□□ -2.08
HOXC4P09017 AC112206.3-201ENST00000514578 389 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 Y_RNA.689-201ENST00000516589 107 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 SNORD60.2-201ENST00000516883 86 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXC4P09017 AC025755.1-201ENST00000521306 278 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
HOXC4P09017 ADI1P3-201ENST00000549509 470 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXC4P09017 AC009127.3-201ENST00000570531 403 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 RPS3AP23-202ENST00000574601 686 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 MIR4448-201ENST00000584360 86 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 MIR4424-201ENST00000585257 86 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 BNIP3P10-201ENST00000605360 577 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 RNU6-89P-201ENST00000606519 100 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 DUSP12P1-201ENST00000612874 516 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.03□□□□□ -2.08
HOXC4P09017 MIR3199-2-201ENST00000636243 86 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 U2.21-201ENST00000637295 81 ntBASIC2.03□□□□□ -2.08
HOXC4P09017 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
HOXC4P09017 RNU6-116P-201ENST00000384042 109 ntBASIC2.02□□□□□ -2.09
HOXC4P09017 MIR514A2-201ENST00000385131 88 ntBASIC2.02□□□□□ -2.09
HOXC4P09017 MIR514A3-201ENST00000385132 88 ntBASIC2.02□□□□□ -2.09
HOXC4P09017 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
HOXC4P09017 RNU6-550P-201ENST00000391057 101 ntBASIC2.02□□□□□ -2.09
HOXC4P09017 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
HOXC4P09017 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.02□□□□□ -2.09
HOXC4P09017 RNU6-1328P-201ENST00000410938 106 ntBASIC2.02□□□□□ -2.09
HOXC4P09017 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.02□□□□□ -2.09
HOXC4P09017 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms