Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AL358794.1-201ENST00000445689 381 ntBASIC0.84□□□□□ -2.27
SDCBPO00560 NDUFB1P2-201ENST00000449477 176 ntBASIC0.84□□□□□ -2.27
SDCBPO00560 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC0.84□□□□□ -2.27
SDCBPO00560 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC0.84□□□□□ -2.27
SDCBPO00560 AC087477.1-201ENST00000465747 340 ntBASIC0.84□□□□□ -2.27
SDCBPO00560 MTCO3P9-201ENST00000506989 781 ntBASIC0.84□□□□□ -2.27
SDCBPO00560 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC0.84□□□□□ -2.27
SDCBPO00560 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC0.84□□□□□ -2.27
SDCBPO00560 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.27
SDCBPO00560 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC0.84□□□□□ -2.27
SDCBPO00560 MIR4307-201ENST00000582802 84 ntBASIC0.84□□□□□ -2.27
SDCBPO00560 AC022022.2-201ENST00000602989 360 ntBASIC0.84□□□□□ -2.27
SDCBPO00560 AC174048.1-201ENST00000603389 144 ntBASIC0.84□□□□□ -2.27
SDCBPO00560 snoU13.31-201ENST00000607291 104 ntBASIC0.84□□□□□ -2.27
SDCBPO00560 AL138960.2-201ENST00000625145 535 ntBASIC0.84□□□□□ -2.27
SDCBPO00560 UGP2-231ENST00000627474 264 ntTSL 5 BASIC0.84□□□□□ -2.27
SDCBPO00560 OR4G3P-201ENST00000633500 913 ntBASIC0.84□□□□□ -2.27
SDCBPO00560 ZNF736P9Y-201ENST00000439586 1345 ntBASIC0.84□□□□□ -2.28
SDCBPO00560 AC099786.3-201ENST00000565735 1410 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.83□□□□□ -2.28
SDCBPO00560 MIR618-201ENST00000385287 98 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 RPS3AP36-201ENST00000398190 775 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC0.83□□□□□ -2.28
SDCBPO00560 RPL21P90-201ENST00000415692 466 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 AC092473.1-201ENST00000441098 221 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 AL122001.1-201ENST00000457027 370 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 AL133373.1-201ENST00000497098 94 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.83□□□□□ -2.28
SDCBPO00560 AC016550.1-201ENST00000505348 785 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 AC108078.1-201ENST00000508073 725 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 HSPE1P23-201ENST00000509838 286 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 AC068587.4-201ENST00000533893 186 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.83□□□□□ -2.28
SDCBPO00560 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.83□□□□□ -2.28
SDCBPO00560 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC0.83□□□□□ -2.28
SDCBPO00560 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 AC137800.2-201ENST00000574375 120 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.83□□□□□ -2.28
SDCBPO00560 AL139022.2-201ENST00000606934 443 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 AL121890.5-201ENST00000620848 304 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 AC008993.2-201ENST00000631744 806 ntBASIC0.83□□□□□ -2.28
SDCBPO00560 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.83□□□□□ -2.28
SDCBPO00560 RNU5E-10P-201ENST00000363506 118 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 RNU4-38P-201ENST00000364472 129 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 RNU6-1187P-201ENST00000364771 110 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.82□□□□□ -2.28
SDCBPO00560 SNORA12-201ENST00000391162 147 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC0.82□□□□□ -2.28
SDCBPO00560 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC0.82□□□□□ -2.28
SDCBPO00560 BTF3L4P1-201ENST00000413813 468 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC0.82□□□□□ -2.28
SDCBPO00560 CALM2P2-201ENST00000428512 440 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 CBX3P6-201ENST00000430257 527 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 AL365400.1-201ENST00000431854 640 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 RNU1-86P-201ENST00000516108 154 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 RNU1-107P-201ENST00000516617 154 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 AC012414.6-201ENST00000568241 401 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 MIR5094-201ENST00000578766 85 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 MIR3118-1-201ENST00000581787 76 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 AL592221.1-201ENST00000605266 382 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.82□□□□□ -2.28
SDCBPO00560 AC104073.3-201ENST00000610942 955 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 AC131159.1-201ENST00000621854 213 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 AC130454.1-201ENST00000622948 401 ntBASIC0.82□□□□□ -2.28
SDCBPO00560 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.82□□□□□ -2.28
SDCBPO00560 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC0.82□□□□□ -2.28
SDCBPO00560 RNA5SP327-201ENST00000362494 101 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 Y_RNA.332-201ENST00000365271 113 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 RNU6-1000P-201ENST00000391066 106 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 MIR1267-201ENST00000408723 78 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 RNU6-757P-201ENST00000410334 100 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 Y_RNA.595-201ENST00000410403 105 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 RNU2-62P-201ENST00000410868 191 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.81□□□□□ -2.28
SDCBPO00560 RPL23AP36-201ENST00000413895 458 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 RPL22P18-201ENST00000417197 377 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
SDCBPO00560 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.81□□□□□ -2.28
SDCBPO00560 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.81□□□□□ -2.28
SDCBPO00560 MTND3P1-201ENST00000441336 220 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 AC007969.2-201ENST00000441891 191 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 AL360271.2-201ENST00000447710 161 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 COX6CP14-201ENST00000469580 174 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 RPL26P26-201ENST00000480251 434 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC0.81□□□□□ -2.28
SDCBPO00560 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.81□□□□□ -2.28
SDCBPO00560 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.81□□□□□ -2.28
SDCBPO00560 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC0.81□□□□□ -2.28
SDCBPO00560 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC0.81□□□□□ -2.28
SDCBPO00560 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC0.81□□□□□ -2.28
SDCBPO00560 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.81□□□□□ -2.28
SDCBPO00560 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC0.81□□□□□ -2.28
SDCBPO00560 AC005786.1-201ENST00000588553 154 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 AL158042.1-201ENST00000605338 460 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 AC123912.5-201ENST00000605470 343 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 AC144521.1-201ENST00000607148 956 ntBASIC0.81□□□□□ -2.28
SDCBPO00560 AC092106.3-201ENST00000611308 722 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms