Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 MIR4444-1-201ENST00000581696 74 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 MIR4444-2-201ENST00000584390 74 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 HMGN2P15-201ENST00000585707 270 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 SRGNP1-201ENST00000603392 451 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 MIR6075-201ENST00000620782 95 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
LIMCH1Q9UPQ0 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 Y_RNA.646-201ENST00000410980 101 ntBASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-1304P-201ENST00000411374 106 ntBASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 AC006199.1-201ENST00000548728 219 ntBASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 ANP32BP3-201ENST00000559213 706 ntBASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 AL080274.1-201ENST00000605565 220 ntBASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 GABRG2-229ENST00000641017 3628 ntBASIC3.48□□□□□ -1.85
LIMCH1Q9UPQ0 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 Y_RNA.2-201ENST00000362330 96 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 RNU1-35P-201ENST00000362782 153 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-527P-201ENST00000363425 104 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 Y_RNA.197-201ENST00000364004 102 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-1317P-201ENST00000364582 104 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 Y_RNA.395-201ENST00000383945 109 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 RNVU1-14-201ENST00000384770 164 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 SNORA75.6-201ENST00000391318 127 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 BMS1P22-201ENST00000414726 313 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 AL591043.1-201ENST00000432461 424 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 MTCYBP6-201ENST00000441810 138 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 FTH1P25-201ENST00000447665 469 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 MTCO3P10-201ENST00000455912 772 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 RPL23AP49-201ENST00000492925 468 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 PTP4A1P4-201ENST00000512479 322 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 AC008885.1-201ENST00000514930 301 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 SNORD19.2-201ENST00000516978 73 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 AP005902.1-201ENST00000521358 186 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 BNIP3P16-201ENST00000589779 534 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 MIR8076-201ENST00000611401 83 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 AC084757.4-201ENST00000616350 526 ntBASIC3.47□□□□□ -1.85
LIMCH1Q9UPQ0 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
LIMCH1Q9UPQ0 RNU6-428P-201ENST00000362942 107 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-105P-201ENST00000363909 104 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-336P-201ENST00000364891 107 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 U8.8-201ENST00000365399 135 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 Y_RNA.394-201ENST00000383942 103 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 Y_RNA.404-201ENST00000383978 102 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 MIR181B1-201ENST00000385240 110 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AL590004.1-201ENST00000405321 300 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-1245P-201ENST00000411130 106 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 RPS15AP5-201ENST00000436276 388 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 Y_RNA.631-201ENST00000459607 101 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 RN7SL807P-201ENST00000470923 297 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 RPL7P42-201ENST00000481005 679 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-612P-201ENST00000516909 102 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 SNORA31.21-201ENST00000517180 77 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AC022634.1-201ENST00000520765 532 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AC109446.1-201ENST00000566172 220 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 MIR4273-201ENST00000582824 84 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AC020895.1-201ENST00000595362 272 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AC069200.1-201ENST00000609511 323 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 HAUS6P2-201ENST00000433254 2404 ntBASIC3.46□□□□□ -1.86
LIMCH1Q9UPQ0 AC004944.1-201ENST00000517807 3059 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 RNA5SP72-201ENST00000364442 117 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-1040P-201ENST00000383974 107 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 SNORA41-201ENST00000384675 132 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 RNA5SP252-201ENST00000391131 119 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 AL591034.2-201ENST00000402839 359 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-174P-201ENST00000410406 106 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 HMGN2P13-201ENST00000476476 274 ntBASIC3.45□□□□□ -1.86
LIMCH1Q9UPQ0 MRPL42P6-201ENST00000486397 371 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms