Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.33□□□□□ -1.88
DKK3Q9UBP4 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.33□□□□□ -1.88
DKK3Q9UBP4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.33□□□□□ -1.88
DKK3Q9UBP4 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.33□□□□□ -1.88
DKK3Q9UBP4 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.33□□□□□ -1.88
DKK3Q9UBP4 MIR7112-201ENST00000616126 65 ntBASIC3.33□□□□□ -1.88
DKK3Q9UBP4 AC099506.2-201ENST00000623074 221 ntBASIC3.33□□□□□ -1.88
DKK3Q9UBP4 AL078596.1-201ENST00000624856 447 ntBASIC3.33□□□□□ -1.88
DKK3Q9UBP4 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
DKK3Q9UBP4 AC008264.2-201ENST00000610193 3731 ntBASIC3.33□□□□□ -1.88
DKK3Q9UBP4 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
DKK3Q9UBP4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
DKK3Q9UBP4 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
DKK3Q9UBP4 RNU6-1059P-201ENST00000363752 98 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 RNU6-166P-201ENST00000384371 107 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 RNY1P14-201ENST00000384426 108 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 RNU6-1106P-201ENST00000390845 107 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 MRPL42P3-201ENST00000401492 326 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 RNU6-985P-201ENST00000410182 104 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 AC243428.1-201ENST00000421099 264 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.32□□□□□ -1.88
DKK3Q9UBP4 AC008267.5-201ENST00000424928 265 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 AL358176.2-201ENST00000425769 204 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.32□□□□□ -1.88
DKK3Q9UBP4 AC018437.1-201ENST00000492214 406 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 AC139453.3-201ENST00000493276 369 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 RNU6-1137P-201ENST00000517073 99 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 SNORA31.19-201ENST00000517079 126 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 RNU6-699P-201ENST00000517081 110 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.32□□□□□ -1.88
DKK3Q9UBP4 HIGD1AP1-201ENST00000550979 275 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 TRAV32-201ENST00000553993 340 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 SUB1P3-201ENST00000564581 315 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 MIR4680-201ENST00000580906 66 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 AC004805.2-201ENST00000605382 482 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 MIR6715A-201ENST00000615929 79 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
DKK3Q9UBP4 AC090740.1-201ENST00000623193 2262 ntBASIC3.32□□□□□ -1.88
DKK3Q9UBP4 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.32□□□□□ -1.88
DKK3Q9UBP4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 AC022336.2-201ENST00000568966 2538 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 MIR148B-201ENST00000362252 99 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 Y_RNA.80-201ENST00000362996 102 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 Y_RNA.428-201ENST00000384078 102 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 Y_RNA.496-201ENST00000384444 101 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 RNU6-1105P-201ENST00000384774 107 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 RNU4-47P-201ENST00000410876 114 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 RNU6-325P-201ENST00000411132 105 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 AL356968.1-201ENST00000416622 474 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 AC113618.1-201ENST00000416747 285 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 AC245291.1-201ENST00000419501 328 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 AC022493.2-201ENST00000506122 481 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 RNU6-264P-201ENST00000517134 104 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 AC109479.2-201ENST00000517842 174 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 LARP7P3-201ENST00000579888 337 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 AC012493.2-201ENST00000595083 291 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 AL121917.1-203ENST00000605534 577 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 uc_338.1-201ENST00000612113 180 ntBASIC3.31□□□□□ -1.88
DKK3Q9UBP4 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
DKK3Q9UBP4 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
DKK3Q9UBP4 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.3□□□□□ -1.88
DKK3Q9UBP4 MTND4P1-201ENST00000457501 1466 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNA5SP432-201ENST00000362480 116 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU1-70P-201ENST00000362618 164 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-37P-201ENST00000362692 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 Y_RNA.144-201ENST00000363521 113 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-11P-201ENST00000364234 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-7-201ENST00000364784 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-8-201ENST00000365467 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-25P-201ENST00000383873 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-1-201ENST00000383898 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-48P-201ENST00000384161 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-36P-201ENST00000384172 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-4P-201ENST00000384205 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-5P-201ENST00000384238 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-3P-201ENST00000384314 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-16P-201ENST00000384385 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-15P-201ENST00000384534 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-2-201ENST00000384627 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-29P-201ENST00000384637 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-9-201ENST00000384776 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-33P-201ENST00000384793 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 MIR34A-201ENST00000385130 110 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AL357075.1-201ENST00000404107 726 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AC098614.2-201ENST00000426040 255 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms