Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC068781.1-201ENST00000488231 618 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 CKS1BP2-201ENST00000497342 240 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 SNORA43.2-201ENST00000516652 128 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 AC027807.1-201ENST00000559921 996 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 AC021646.1-201ENST00000605469 484 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 AC096772.1-201ENST00000609146 564 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 MIR5739-201ENST00000619803 80 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 RMST_7.1-201ENST00000621935 268 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
VPS54Q9P1Q0 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 SNORD114-1-201ENST00000362705 72 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 SNORD114-19-201ENST00000363072 75 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 Y_RNA.381-201ENST00000365666 102 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 RNU2-63P-201ENST00000410792 194 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 EIF1AXP1-201ENST00000419267 435 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 EIF4EP4-201ENST00000424916 578 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 AL451074.3-201ENST00000437709 472 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 SNORA31.23-201ENST00000517219 133 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 MTATP6P3-201ENST00000581686 676 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 AL391646.1-201ENST00000603860 190 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 AL355297.2-201ENST00000604792 129 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 AC007684.1-201ENST00000609671 477 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 RMST_4.1-201ENST00000616886 107 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 AL031601.2-202ENST00000622650 282 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 SCARNA4-202ENST00000625402 129 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 MIR3529-201ENST00000637713 78 ntBASIC2.21□□□□□ -2.06
VPS54Q9P1Q0 RNU6-529P-201ENST00000363383 104 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 Y_RNA.296-201ENST00000364930 108 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 SNORD70.1-201ENST00000391007 85 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 RAP1BP3-201ENST00000407180 549 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 RNU4-46P-201ENST00000410818 138 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AC074117.2-201ENST00000417130 397 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 TOMM20P4-201ENST00000427861 435 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AC073464.1-201ENST00000429823 534 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AC003989.2-201ENST00000440224 169 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 UBL5P3-201ENST00000475112 231 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AP001025.1-201ENST00000486139 332 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AC079382.1-201ENST00000493346 557 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AC093534.1-201ENST00000504977 132 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 MTCO3P7-201ENST00000510008 774 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AC010493.1-201ENST00000513479 292 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AP005435.4-201ENST00000529514 284 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AC136619.2-201ENST00000563361 631 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 AC009318.2-201ENST00000610917 651 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 MTND4P1-201ENST00000457501 1466 ntBASIC2.2□□□□□ -2.06
VPS54Q9P1Q0 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 OR4G2P-201ENST00000328113 903 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 SNORD56.1-201ENST00000362913 68 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 RNU6-1119P-201ENST00000384349 108 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 RNU6-393P-201ENST00000384475 107 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 U3.40-201ENST00000408706 208 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 RN7SKP158-201ENST00000410453 326 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 MTCYBP8-201ENST00000422855 651 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 MTCO2P19-201ENST00000427513 598 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 AC002486.1-201ENST00000435098 391 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 PSPHP1-201ENST00000450062 261 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 AC105417.1-201ENST00000514691 285 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 RN7SKP219-201ENST00000516825 296 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 CYCSP26-201ENST00000534107 320 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 AC009090.3-201ENST00000616553 565 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 uc_338.11-201ENST00000619132 160 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 AC005858.4-201ENST00000623191 700 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 AC092881.1-201ENST00000638218 2733 ntBASIC2.19□□□□□ -2.06
VPS54Q9P1Q0 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 Y_RNA.324-201ENST00000365165 102 ntBASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 RNU6-1032P-201ENST00000384100 107 ntBASIC2.18□□□□□ -2.06
VPS54Q9P1Q0 RNU6-1103P-201ENST00000384150 107 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 153.7 ms