Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 U6.92-201ENST00000636464 89 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 LINC02555-201ENST00000563933 1951 ntBASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC87Q9NVE4 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 Y_RNA.20-201ENST00000362479 113 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 Y_RNA.84-201ENST00000363011 104 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 SNORD81.1-201ENST00000363064 77 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 Y_RNA.105-201ENST00000363182 111 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 RNU6-898P-201ENST00000365627 104 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 RNU6-1286P-201ENST00000383871 107 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 Y_RNA.416-201ENST00000384014 113 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 MIR708-201ENST00000390708 88 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 RPL21P38-201ENST00000418090 167 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 AC084357.1-201ENST00000473404 255 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 RPS23P5-201ENST00000495419 428 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 RNU2-58P-201ENST00000516403 183 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 NACAP3-201ENST00000552100 481 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 AC007375.1-201ENST00000554513 578 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 AC012433.1-201ENST00000588916 398 ntBASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.6□□□□□ -1.67
CCDC87Q9NVE4 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 RNU6-17P-201ENST00000384245 107 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 Y_RNA.477-201ENST00000384352 108 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 RNU6-18P-201ENST00000384527 107 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 RNA5SP239-201ENST00000410218 129 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 TMEM167AP1-201ENST00000423409 219 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 FTH1P6-201ENST00000430768 320 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 AL590664.1-201ENST00000448065 339 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 RPS26P21-201ENST00000475397 348 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 TRBV12-2-201ENST00000489763 344 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 RPL23AP75-201ENST00000491601 451 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 IGHVII-53-1-201ENST00000519538 255 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 CR383656.8-201ENST00000549046 145 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 AL109918.3-201ENST00000603072 338 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 RPL23AP88-201ENST00000605759 454 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 MIR376A1-201ENST00000616574 68 ntBASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC87Q9NVE4 LINC02471-203ENST00000641941 4752 ntBASIC4.59□□□□□ -1.68
CCDC87Q9NVE4 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.59□□□□□ -1.68
CCDC87Q9NVE4 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.59□□□□□ -1.68
CCDC87Q9NVE4 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 AL353743.1-202ENST00000431724 1695 ntBASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 RNU6-142P-201ENST00000384019 107 ntBASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 SNORD17-201ENST00000390930 237 ntBASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 SNORD78.2-201ENST00000391076 69 ntBASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 UBA52P6-201ENST00000399822 382 ntBASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 AL603908.1-201ENST00000406098 201 ntBASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 MIR548I3-201ENST00000408378 149 ntBASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 MIR548I1-201ENST00000408810 149 ntBASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 RAC1P3-201ENST00000416129 580 ntBASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 AC243964.1-201ENST00000441814 261 ntBASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 AC009296.1-201ENST00000443146 155 ntBASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 AL353705.4-201ENST00000449661 238 ntBASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 TEX41-209ENST00000451478 452 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 Y_RNA.673-201ENST00000516306 88 ntBASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 CENPF-206ENST00000614578 528 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC87Q9NVE4 AC058791.1-201ENST00000608412 3198 ntBASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 AL391987.6-201ENST00000305671 199 ntBASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 SNORD74.4-201ENST00000364129 80 ntBASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 Y_RNA.510-201ENST00000384511 114 ntBASIC4.57□□□□□ -1.68
CCDC87Q9NVE4 HLFP1-201ENST00000402375 499 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 130.2 ms