Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
PRPF39Q86UA1 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
PRPF39Q86UA1 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.55□□□□□ -2
PRPF39Q86UA1 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
PRPF39Q86UA1 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.54□□□□□ -2
PRPF39Q86UA1 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.54□□□□□ -2
PRPF39Q86UA1 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
PRPF39Q86UA1 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
PRPF39Q86UA1 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.54□□□□□ -2
PRPF39Q86UA1 RNU6-1210P-201ENST00000363775 107 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 U3.13-201ENST00000364804 214 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 U8.8-201ENST00000365399 135 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 MIR544A-201ENST00000384855 91 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.54□□□□□ -2
PRPF39Q86UA1 AC010975.2-201ENST00000427781 588 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.54□□□□□ -2
PRPF39Q86UA1 AL121601.2-201ENST00000438019 707 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 RPL7P54-201ENST00000438336 674 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.54□□□□□ -2
PRPF39Q86UA1 RNU7-167P-201ENST00000459160 62 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 RPL37P25-201ENST00000507308 276 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 AC105313.1-201ENST00000509121 353 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 RNA5SP402-201ENST00000517148 110 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.54□□□□□ -2
PRPF39Q86UA1 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.54□□□□□ -2
PRPF39Q86UA1 AL138976.2-201ENST00000563989 694 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 AC107304.1-201ENST00000604229 296 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 AP001596.2-201ENST00000608410 312 ntBASIC2.54□□□□□ -2
PRPF39Q86UA1 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.54□□□□□ -2
PRPF39Q86UA1 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.53□□□□□ -2
PRPF39Q86UA1 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.53□□□□□ -2
PRPF39Q86UA1 RNA5SP456-201ENST00000364002 114 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 RNU6-1322P-201ENST00000364309 107 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 Y_RNA.399-201ENST00000383955 105 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 Y_RNA.481-201ENST00000384373 102 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 SNORA67.4-201ENST00000384688 142 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 MIR518C-201ENST00000384822 101 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 MIR561-201ENST00000385216 97 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 SNORD56-201ENST00000413522 71 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.53□□□□□ -2
PRPF39Q86UA1 AIMP1P2-201ENST00000425294 312 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 RNU7-180P-201ENST00000459240 63 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 AC068781.1-201ENST00000488231 618 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.53□□□□□ -2
PRPF39Q86UA1 RNA5SP401-201ENST00000515920 127 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 AC022880.1-201ENST00000534017 973 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 AL512310.1-201ENST00000548639 172 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.53□□□□□ -2
PRPF39Q86UA1 MIR3126-201ENST00000577443 74 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 AC123912.5-201ENST00000605470 343 ntBASIC2.53□□□□□ -2
PRPF39Q86UA1 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.53□□□□□ -2.01
PRPF39Q86UA1 RNU6-1085P-201ENST00000363576 107 ntBASIC2.52□□□□□ -2.01
PRPF39Q86UA1 RNU6-105P-201ENST00000363909 104 ntBASIC2.52□□□□□ -2.01
PRPF39Q86UA1 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.52□□□□□ -2.01
PRPF39Q86UA1 AL162578.1-201ENST00000406202 378 ntBASIC2.52□□□□□ -2.01
PRPF39Q86UA1 AC016691.1-201ENST00000441321 413 ntBASIC2.52□□□□□ -2.01
PRPF39Q86UA1 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.52□□□□□ -2.01
PRPF39Q86UA1 SNRPGP7-201ENST00000469016 106 ntBASIC2.52□□□□□ -2.01
PRPF39Q86UA1 AL121594.1-201ENST00000475906 575 ntBASIC2.52□□□□□ -2.01
PRPF39Q86UA1 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.52□□□□□ -2.01
PRPF39Q86UA1 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.52□□□□□ -2.01
PRPF39Q86UA1 SNORA40.12-201ENST00000516329 111 ntBASIC2.52□□□□□ -2.01
PRPF39Q86UA1 SNORA25.17-201ENST00000517184 124 ntBASIC2.52□□□□□ -2.01
PRPF39Q86UA1 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.52□□□□□ -2.01
PRPF39Q86UA1 AC080013.6-201ENST00000606185 215 ntBASIC2.52□□□□□ -2.01
PRPF39Q86UA1 AC017083.3-201ENST00000609955 700 ntBASIC2.52□□□□□ -2.01
PRPF39Q86UA1 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.52□□□□□ -2.01
PRPF39Q86UA1 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.52□□□□□ -2.01
PRPF39Q86UA1 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.51□□□□□ -2.01
PRPF39Q86UA1 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
PRPF39Q86UA1 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.51□□□□□ -2.01
PRPF39Q86UA1 Y_RNA.194-201ENST00000363985 102 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 XGY1-201ENST00000381172 446 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 RNA5SP219-201ENST00000390940 113 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 MTCO3P40-201ENST00000392516 676 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
PRPF39Q86UA1 RNU6-293P-201ENST00000411259 106 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 AC009963.1-201ENST00000417265 157 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
PRPF39Q86UA1 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.51□□□□□ -2.01
PRPF39Q86UA1 VN1R108P-201ENST00000431580 830 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
PRPF39Q86UA1 AC007969.2-201ENST00000441891 191 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 USP9YP8-201ENST00000441913 500 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.51□□□□□ -2.01
PRPF39Q86UA1 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.51□□□□□ -2.01
PRPF39Q86UA1 MTND2P33-201ENST00000506452 1031 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 HMGB3P3-201ENST00000510526 400 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 RNA5SP24-201ENST00000516478 95 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 SNORA48.11-201ENST00000517015 89 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 AC118273.2-201ENST00000532092 465 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.51□□□□□ -2.01
PRPF39Q86UA1 MTCO3P23-201ENST00000561363 289 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.51□□□□□ -2.01
PRPF39Q86UA1 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.51□□□□□ -2.01
PRPF39Q86UA1 APOOP1-201ENST00000604695 592 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 AP001330.5-201ENST00000607176 411 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 AC064859.1-201ENST00000624741 174 ntBASIC2.51□□□□□ -2.01
PRPF39Q86UA1 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.51□□□□□ -2.01
PRPF39Q86UA1 FO624990.1-201ENST00000636373 85 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms