Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FGF7P8-201ENST00000402994 292 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 RNU4-62P-201ENST00000410125 130 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 ISCA1P6-201ENST00000427740 390 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.32□□□□□ -2.2
FOXA1P55317 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.32□□□□□ -2.2
FOXA1P55317 TAF9P1-201ENST00000445421 515 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC1.32□□□□□ -2.2
FOXA1P55317 KATNBL1P6-201ENST00000453433 915 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 RPL23AP3-201ENST00000453844 468 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 TAF9P2-201ENST00000454958 515 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.32□□□□□ -2.2
FOXA1P55317 RNU7-125P-201ENST00000458760 62 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC1.32□□□□□ -2.2
FOXA1P55317 RAP1BP2-201ENST00000478270 544 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 AC096745.1-201ENST00000509945 370 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 RNU2-53P-201ENST00000516257 147 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 Y_RNA.687-201ENST00000516558 91 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC1.32□□□□□ -2.2
FOXA1P55317 AC107953.1-201ENST00000522216 297 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 CR383656.8-201ENST00000549046 145 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 MTND1P24-201ENST00000552175 861 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.32□□□□□ -2.2
FOXA1P55317 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.32□□□□□ -2.2
FOXA1P55317 AC093249.1-201ENST00000567049 203 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 MIR4299-201ENST00000577899 72 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 MIR4303-201ENST00000581299 66 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 MIR548AB-201ENST00000584917 84 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 AL031274.2-201ENST00000599419 203 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 WISP1-OT1-201ENST00000602893 642 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 AL353778.1-201ENST00000603149 408 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC1.32□□□□□ -2.2
FOXA1P55317 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
FOXA1P55317 RNU6-1010P-201ENST00000362757 107 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 RNU6-487P-201ENST00000365430 104 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 RNU6-61P-201ENST00000365528 109 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 RNU6-622P-201ENST00000384272 103 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 SNORD116-20-201ENST00000384529 92 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 Y_RNA.560-201ENST00000384689 102 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 HMGN2P39-201ENST00000398005 273 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 EEF1A1P40-201ENST00000412883 573 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.31□□□□□ -2.2
FOXA1P55317 Z99497.1-201ENST00000421282 135 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC1.31□□□□□ -2.2
FOXA1P55317 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.31□□□□□ -2.2
FOXA1P55317 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 AL360271.2-201ENST00000447710 161 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.31□□□□□ -2.2
FOXA1P55317 RPL30P6-201ENST00000475925 342 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 AP001025.1-201ENST00000486139 332 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 MTCYBP18-201ENST00000501056 747 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC1.31□□□□□ -2.2
FOXA1P55317 FABP5P5-201ENST00000515537 406 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 RNA5SP137-201ENST00000516833 135 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.31□□□□□ -2.2
FOXA1P55317 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC1.31□□□□□ -2.2
FOXA1P55317 AP003033.1-201ENST00000527244 415 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC1.31□□□□□ -2.2
FOXA1P55317 ZNF321P-202ENST00000550843 495 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC1.31□□□□□ -2.2
FOXA1P55317 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.31□□□□□ -2.2
FOXA1P55317 MIR4781-201ENST00000585250 76 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 AC005771.1-201ENST00000585581 349 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 AC008521.1-201ENST00000587471 187 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 AC012065.4-201ENST00000602445 679 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 AC098614.4-201ENST00000607601 462 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC1.31□□□□□ -2.2
FOXA1P55317 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC1.31□□□□□ -2.2
FOXA1P55317 RMST_6.1-201ENST00000611980 203 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 AC091304.9-201ENST00000612091 226 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 uc_338.15-201ENST00000615470 191 ntBASIC1.31□□□□□ -2.2
FOXA1P55317 ZNF702P-202ENST00000434269 1966 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 HAUS6P2-201ENST00000433254 2404 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 RNA5SP276-201ENST00000362580 94 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 RNU6-529P-201ENST00000363383 104 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 RNU6-371P-201ENST00000364283 108 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 SNORA20.2-201ENST00000383922 131 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 MIR758-201ENST00000390227 88 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 SNORA67.5-201ENST00000391036 107 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 AL033519.2-201ENST00000403958 392 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 Y_RNA.598-201ENST00000410480 95 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 RNA5SP111-201ENST00000411386 101 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
FOXA1P55317 AP1B1P2-201ENST00000416196 106 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 CALM2P2-201ENST00000428512 440 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.3□□□□□ -2.2
FOXA1P55317 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.3□□□□□ -2.2
FOXA1P55317 AC104850.1-201ENST00000435940 476 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 RPL23AP6-201ENST00000446637 472 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.3□□□□□ -2.2
FOXA1P55317 RPS29P23-201ENST00000458635 123 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.3□□□□□ -2.2
FOXA1P55317 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.3□□□□□ -2.2
FOXA1P55317 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC1.3□□□□□ -2.2
FOXA1P55317 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC1.3□□□□□ -2.2
FOXA1P55317 RNU1-86P-201ENST00000516108 154 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 Y_RNA.673-201ENST00000516306 88 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 SCARNA24.1-201ENST00000516465 137 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 RNU1-107P-201ENST00000516617 154 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 RNU2-46P-201ENST00000517038 113 ntBASIC1.3□□□□□ -2.2
FOXA1P55317 RNU6-586P-201ENST00000517265 104 ntBASIC1.3□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms