Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 BTF3P15-201ENST00000455606 336 ntBASIC1.92□□□□□ -2.1
MSH6P52701 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.92□□□□□ -2.1
MSH6P52701 RPL7P43-201ENST00000478876 753 ntBASIC1.92□□□□□ -2.1
MSH6P52701 RPL36AP48-201ENST00000485521 314 ntBASIC1.92□□□□□ -2.1
MSH6P52701 MTCYBP35-201ENST00000503630 1137 ntBASIC1.92□□□□□ -2.1
MSH6P52701 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.92□□□□□ -2.1
MSH6P52701 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC1.92□□□□□ -2.1
MSH6P52701 AP005902.1-201ENST00000521358 186 ntBASIC1.92□□□□□ -2.1
MSH6P52701 RPL21P5-201ENST00000554662 472 ntBASIC1.92□□□□□ -2.1
MSH6P52701 MTATP6P24-201ENST00000576835 677 ntBASIC1.92□□□□□ -2.1
MSH6P52701 AC105245.1-201ENST00000581934 244 ntBASIC1.92□□□□□ -2.1
MSH6P52701 AC087045.1-201ENST00000605856 382 ntBASIC1.92□□□□□ -2.1
MSH6P52701 AL360219.1-201ENST00000610230 366 ntBASIC1.92□□□□□ -2.1
MSH6P52701 AC091304.9-201ENST00000612091 226 ntBASIC1.92□□□□□ -2.1
MSH6P52701 AL162373.1-201ENST00000620433 407 ntBASIC1.92□□□□□ -2.1
MSH6P52701 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.92□□□□□ -2.1
MSH6P52701 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
MSH6P52701 RNU6-553P-201ENST00000364047 96 ntBASIC1.91□□□□□ -2.1
MSH6P52701 CIR1P3-201ENST00000405137 479 ntBASIC1.91□□□□□ -2.1
MSH6P52701 Y_RNA.598-201ENST00000410480 95 ntBASIC1.91□□□□□ -2.1
MSH6P52701 CYCSP48-201ENST00000417124 323 ntBASIC1.91□□□□□ -2.1
MSH6P52701 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC1.91□□□□□ -2.1
MSH6P52701 AC007395.1-201ENST00000451333 677 ntBASIC1.91□□□□□ -2.1
MSH6P52701 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC1.91□□□□□ -2.1
MSH6P52701 BZW1P2-201ENST00000473537 826 ntBASIC1.91□□□□□ -2.1
MSH6P52701 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.91□□□□□ -2.1
MSH6P52701 AC004223.1-201ENST00000479840 271 ntBASIC1.91□□□□□ -2.1
MSH6P52701 AC011005.2-201ENST00000487324 359 ntBASIC1.91□□□□□ -2.1
MSH6P52701 MRPS33P3-201ENST00000513456 322 ntBASIC1.91□□□□□ -2.1
MSH6P52701 Y_RNA.672-201ENST00000516289 104 ntBASIC1.91□□□□□ -2.1
MSH6P52701 Y_RNA.675-201ENST00000516389 149 ntBASIC1.91□□□□□ -2.1
MSH6P52701 RNU6-232P-201ENST00000517144 64 ntBASIC1.91□□□□□ -2.1
MSH6P52701 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC1.91□□□□□ -2.1
MSH6P52701 AC106038.2-201ENST00000520706 568 ntBASIC1.91□□□□□ -2.1
MSH6P52701 AC079598.5-201ENST00000547460 117 ntBASIC1.91□□□□□ -2.1
MSH6P52701 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.91□□□□□ -2.1
MSH6P52701 AC012065.4-201ENST00000602445 679 ntBASIC1.91□□□□□ -2.1
MSH6P52701 AL451064.1-201ENST00000607718 471 ntBASIC1.91□□□□□ -2.1
MSH6P52701 RNU6-91P-201ENST00000607774 107 ntBASIC1.91□□□□□ -2.1
MSH6P52701 AL359547.2-201ENST00000615810 418 ntBASIC1.91□□□□□ -2.1
MSH6P52701 AC024940.5-201ENST00000622889 474 ntBASIC1.91□□□□□ -2.1
MSH6P52701 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.91□□□□□ -2.1
MSH6P52701 Z75746.1-201ENST00000440243 2080 ntBASIC1.9□□□□□ -2.1
MSH6P52701 RNU5F-7P-201ENST00000363696 115 ntBASIC1.9□□□□□ -2.11
MSH6P52701 RNU6-1080P-201ENST00000383982 107 ntBASIC1.9□□□□□ -2.11
MSH6P52701 MIR558-201ENST00000384920 94 ntBASIC1.9□□□□□ -2.11
MSH6P52701 RPL23AP32-201ENST00000395315 459 ntBASIC1.9□□□□□ -2.11
MSH6P52701 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC1.9□□□□□ -2.11
MSH6P52701 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.9□□□□□ -2.11
MSH6P52701 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC1.9□□□□□ -2.11
MSH6P52701 SNRPGP13-201ENST00000442212 177 ntBASIC1.9□□□□□ -2.11
MSH6P52701 HMGN2P18-201ENST00000450680 270 ntBASIC1.9□□□□□ -2.11
MSH6P52701 RNA5SP233-201ENST00000459153 113 ntBASIC1.9□□□□□ -2.11
MSH6P52701 AC018437.1-201ENST00000492214 406 ntBASIC1.9□□□□□ -2.11
MSH6P52701 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.9□□□□□ -2.11
MSH6P52701 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC1.9□□□□□ -2.11
MSH6P52701 AC011712.1-201ENST00000588959 234 ntBASIC1.9□□□□□ -2.11
MSH6P52701 AC007229.1-201ENST00000590455 412 ntBASIC1.9□□□□□ -2.11
MSH6P52701 FTH1P15-201ENST00000406984 280 ntBASIC1.89□□□□□ -2.11
MSH6P52701 AL353621.1-201ENST00000418219 243 ntBASIC1.89□□□□□ -2.11
MSH6P52701 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC1.89□□□□□ -2.11
MSH6P52701 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.89□□□□□ -2.11
MSH6P52701 RPL7P34-201ENST00000433316 712 ntBASIC1.89□□□□□ -2.11
MSH6P52701 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.89□□□□□ -2.11
MSH6P52701 MTND1P18-201ENST00000448191 573 ntBASIC1.89□□□□□ -2.11
MSH6P52701 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.89□□□□□ -2.11
MSH6P52701 MTCYBP18-201ENST00000501056 747 ntBASIC1.89□□□□□ -2.11
MSH6P52701 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC1.89□□□□□ -2.11
MSH6P52701 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.89□□□□□ -2.11
MSH6P52701 AF213884.2-201ENST00000510417 903 ntBASIC1.89□□□□□ -2.11
MSH6P52701 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC1.89□□□□□ -2.11
MSH6P52701 MIR892C-201ENST00000516410 77 ntBASIC1.89□□□□□ -2.11
MSH6P52701 RNU2-46P-201ENST00000517038 113 ntBASIC1.89□□□□□ -2.11
MSH6P52701 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.89□□□□□ -2.11
MSH6P52701 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.89□□□□□ -2.11
MSH6P52701 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.89□□□□□ -2.11
MSH6P52701 AL133241.1-201ENST00000556832 487 ntBASIC1.89□□□□□ -2.11
MSH6P52701 AC092325.1-201ENST00000566449 554 ntBASIC1.89□□□□□ -2.11
MSH6P52701 AC090897.2-201ENST00000581715 130 ntBASIC1.89□□□□□ -2.11
MSH6P52701 AC092354.1-201ENST00000606057 376 ntBASIC1.89□□□□□ -2.11
MSH6P52701 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC1.89□□□□□ -2.11
MSH6P52701 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC1.89□□□□□ -2.11
MSH6P52701 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.89□□□□□ -2.11
MSH6P52701 AP001486.3-201ENST00000615334 372 ntBASIC1.89□□□□□ -2.11
MSH6P52701 AC009233.1-201ENST00000616477 371 ntBASIC1.89□□□□□ -2.11
MSH6P52701 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
MSH6P52701 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
MSH6P52701 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
MSH6P52701 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
MSH6P52701 RNU2-39P-201ENST00000410604 198 ntBASIC1.88□□□□□ -2.11
MSH6P52701 RNU2-8P-201ENST00000410727 190 ntBASIC1.88□□□□□ -2.11
MSH6P52701 AL031779.1-201ENST00000415663 330 ntBASIC1.88□□□□□ -2.11
MSH6P52701 POLR2J4-204ENST00000418424 324 ntBASIC1.88□□□□□ -2.11
MSH6P52701 ELOCP4-201ENST00000420090 333 ntBASIC1.88□□□□□ -2.11
MSH6P52701 AL365338.1-201ENST00000422282 858 ntBASIC1.88□□□□□ -2.11
MSH6P52701 AL365203.2-201ENST00000423444 196 ntBASIC1.88□□□□□ -2.11
MSH6P52701 MED13P1-201ENST00000428342 171 ntBASIC1.88□□□□□ -2.11
MSH6P52701 IFNA20P-201ENST00000436840 528 ntBASIC1.88□□□□□ -2.11
MSH6P52701 MTND1P30-201ENST00000441241 901 ntBASIC1.88□□□□□ -2.11
MSH6P52701 NDUFB1P2-201ENST00000449477 176 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms