Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNU6-805P-201ENST00000365643 106 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 RNU6-741P-201ENST00000383889 107 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 MIR634-201ENST00000385208 97 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 Y_RNA.605-201ENST00000410577 105 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 COTL1P1-201ENST00000422309 375 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 MTCYBP10-201ENST00000424905 650 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 AL512844.2-201ENST00000433990 593 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 AC107083.1-201ENST00000439643 279 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 AC099799.1-201ENST00000439809 192 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 RNU6-1037P-201ENST00000459571 107 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 AC128713.1-201ENST00000471495 306 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXD9P28356 AC068781.1-201ENST00000488231 618 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 AC018437.1-201ENST00000492214 406 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.08□□□□□ -1.92
HOXD9P28356 AC113155.1-201ENST00000511141 769 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 RNU6-120P-201ENST00000516077 103 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 RNU1-103P-201ENST00000516502 125 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 SCARNA13-201ENST00000516672 275 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 RNU6-1282P-201ENST00000516735 96 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 RNA5SP290-201ENST00000517133 127 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 TRAV32-201ENST00000553993 340 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 AC109446.1-201ENST00000566172 220 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 MIR5047-201ENST00000579212 100 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 MIR4503-201ENST00000582187 83 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 AC123912.5-201ENST00000605470 343 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 AC007318.2-201ENST00000620999 243 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 Z69720.2-201ENST00000624755 279 ntBASIC3.08□□□□□ -1.92
HOXD9P28356 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
HOXD9P28356 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD9P28356 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXD9P28356 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.07□□□□□ -1.92
HOXD9P28356 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
HOXD9P28356 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD9P28356 SNORA80A-201ENST00000363922 136 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 SNORD14B-201ENST00000364533 90 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 SNORA14A-201ENST00000364773 135 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
HOXD9P28356 RNA5SP252-201ENST00000391131 119 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 Y_RNA.645-201ENST00000391229 102 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 Y_RNA.623-201ENST00000411128 95 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 HMGB3P2-201ENST00000411913 584 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD9P28356 AC007919.1-201ENST00000429380 217 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 AL627311.1-201ENST00000431514 115 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 AC125238.1-201ENST00000448842 249 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 AL031183.1-201ENST00000457667 207 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 RNA5SP291-201ENST00000517222 105 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD9P28356 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXD9P28356 COX6CP5-201ENST00000527162 228 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD9P28356 HMGB1P14-201ENST00000557424 591 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 AC092447.9-201ENST00000603395 144 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 AL645944.1-201ENST00000603857 493 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 AC104695.3-201ENST00000604052 296 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 AL121917.1-203ENST00000605534 577 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.07□□□□□ -1.92
HOXD9P28356 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXD9P28356 AL137790.1-201ENST00000634283 177 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXD9P28356 AL021368.2-201ENST00000606125 5352 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 AC005592.1-201ENST00000566527 1640 ntBASIC3.07□□□□□ -1.92
HOXD9P28356 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.07□□□□□ -1.92
HOXD9P28356 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
HOXD9P28356 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXD9P28356 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.07□□□□□ -1.92
HOXD9P28356 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HOXD9P28356 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD9P28356 AL035425.3-201ENST00000564206 4996 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 Y_RNA.452-201ENST00000384202 108 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 Y_RNA.527-201ENST00000384573 102 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 SNORA46-201ENST00000384762 135 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
HOXD9P28356 U3.26-201ENST00000391236 204 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 SNORA40C-201ENST00000391285 128 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 RNU6-325P-201ENST00000411132 105 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 SNORD56-201ENST00000413522 71 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 EEF1A1P41-201ENST00000414667 207 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.06□□□□□ -1.92
HOXD9P28356 AC093151.1-201ENST00000427711 313 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.06□□□□□ -1.92
HOXD9P28356 RPL37P4-201ENST00000448908 268 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 RPL17P19-201ENST00000489069 552 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXD9P28356 AC025755.1-201ENST00000521306 278 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 AP000867.2-201ENST00000532468 320 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 TRAV28-201ENST00000557548 323 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.06□□□□□ -1.92
HOXD9P28356 AC004817.2-201ENST00000561794 651 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 AC138305.3-201ENST00000624988 240 ntBASIC3.06□□□□□ -1.92
HOXD9P28356 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD9P28356 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD9P28356 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD9P28356 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HOXD9P28356 Y_RNA.455-201ENST00000384230 98 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 RNU6-574P-201ENST00000384265 107 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 Y_RNA.557-201ENST00000384680 107 ntBASIC3.05□□□□□ -1.92
HOXD9P28356 RNU2-23P-201ENST00000410545 195 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms