Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 IL7-206ENST00000520269 456 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXD4P09016 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HOXD4P09016 PRELID2P1-201ENST00000552837 301 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 PSMA3P-201ENST00000555485 635 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXD4P09016 AC021646.1-201ENST00000605469 484 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 Z82243.1-201ENST00000609432 473 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 AC103705.1-201ENST00000619013 241 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 AC009248.2-201ENST00000619826 254 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 U2.21-201ENST00000637295 81 ntBASIC2.33□□□□□ -2.04
HOXD4P09016 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HOXD4P09016 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
HOXD4P09016 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
HOXD4P09016 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.32□□□□□ -2.04
HOXD4P09016 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXD4P09016 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXD4P09016 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXD4P09016 CBX3P1-201ENST00000325243 554 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.32□□□□□ -2.04
HOXD4P09016 Y_RNA.70-201ENST00000362886 110 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 Y_RNA.100-201ENST00000363141 102 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 RNU6-884P-201ENST00000363889 107 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 RNU6-767P-201ENST00000384132 107 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 MIR627-201ENST00000384979 97 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 SNORA40C-201ENST00000391285 128 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXD4P09016 AL356057.2-201ENST00000403318 432 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 U3.37-201ENST00000408528 213 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 RNU2-3P-201ENST00000410144 191 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 CYCSP33-201ENST00000414485 327 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 AL353621.1-201ENST00000418219 243 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.32□□□□□ -2.04
HOXD4P09016 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXD4P09016 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.32□□□□□ -2.04
HOXD4P09016 AL583843.1-201ENST00000456070 346 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 RPL26P9-201ENST00000457466 433 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 snoU13.26-201ENST00000459452 105 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 AC117503.1-201ENST00000472241 394 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 AC091951.2-201ENST00000500762 203 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXD4P09016 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.32□□□□□ -2.04
HOXD4P09016 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.32□□□□□ -2.04
HOXD4P09016 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.32□□□□□ -2.04
HOXD4P09016 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXD4P09016 AP000763.2-201ENST00000540641 163 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 AC121758.2-201ENST00000553271 193 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.32□□□□□ -2.04
HOXD4P09016 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXD4P09016 LRRC37A5P-203ENST00000580181 585 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 MIR4635-201ENST00000583759 79 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 HMGN2P15-201ENST00000585707 270 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 AC002044.1-201ENST00000606707 158 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 AC022306.2-201ENST00000617563 647 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 MIR7843-201ENST00000622274 79 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 AL031601.2-202ENST00000622650 282 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.32□□□□□ -2.04
HOXD4P09016 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
HOXD4P09016 AC121333.1-201ENST00000567488 2709 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXD4P09016 ZNF658B-202ENST00000615961 3375 ntBASIC2.32□□□□□ -2.04
HOXD4P09016 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.31□□□□□ -2.04
HOXD4P09016 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.31□□□□□ -2.04
HOXD4P09016 MIR412-201ENST00000362142 91 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 RNU6-266P-201ENST00000364225 107 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 SNORD14B-201ENST00000364533 90 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 RNU6-384P-201ENST00000364900 104 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 RNU6-1180P-201ENST00000364935 107 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
HOXD4P09016 RNU6-166P-201ENST00000384371 107 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 RNU6-831P-201ENST00000384548 107 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 Y_RNA.530-201ENST00000384587 101 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 MIR504-201ENST00000385065 83 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 RNU6-607P-201ENST00000411283 108 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 RN7SKP192-201ENST00000411291 327 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 USP9YP20-201ENST00000419224 558 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.31□□□□□ -2.04
HOXD4P09016 SKA2P1-201ENST00000425592 390 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 AC007560.1-201ENST00000426912 237 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.31□□□□□ -2.04
HOXD4P09016 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.31□□□□□ -2.04
HOXD4P09016 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.31□□□□□ -2.04
HOXD4P09016 AC011816.1-201ENST00000441346 546 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.31□□□□□ -2.04
HOXD4P09016 BRK1P2-201ENST00000442875 223 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 RPL7P12-201ENST00000446719 750 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.31□□□□□ -2.04
HOXD4P09016 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.31□□□□□ -2.04
HOXD4P09016 ANXA2P1-201ENST00000505539 926 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 RNU4-49P-201ENST00000516080 140 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 RNU6-572P-201ENST00000516724 80 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 RNU1-104P-201ENST00000517280 175 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.31□□□□□ -2.04
HOXD4P09016 AC087241.2-201ENST00000535801 324 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 AC243972.3-201ENST00000539655 198 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 SCOCP1-201ENST00000554676 349 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.31□□□□□ -2.04
HOXD4P09016 UBE2V2P2-201ENST00000587677 504 ntBASIC2.31□□□□□ -2.04
HOXD4P09016 AL355877.2-201ENST00000603670 358 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms