Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.38□□□□□ -1.87
COL3A1P02461 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.38□□□□□ -1.87
COL3A1P02461 AC011494.1-201ENST00000596454 237 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 MIR6864-201ENST00000617935 70 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 AL138825.1-201ENST00000618587 192 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 AP001005.3-201ENST00000622049 129 ntBASIC3.38□□□□□ -1.87
COL3A1P02461 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
COL3A1P02461 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL3A1P02461 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC3.37□□□□□ -1.87
COL3A1P02461 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.37□□□□□ -1.87
COL3A1P02461 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL3A1P02461 RNU6-33P-201ENST00000384793 107 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 SNORA16.2-201ENST00000390991 127 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 RNA5SP210-201ENST00000391034 120 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 AL109755.1-201ENST00000401791 649 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 AC003685.2-201ENST00000422795 395 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 AC073910.1-201ENST00000445047 438 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.37□□□□□ -1.87
COL3A1P02461 AC112492.4-201ENST00000456549 352 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.37□□□□□ -1.87
COL3A1P02461 AC092185.1-201ENST00000491371 97 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 AP001086.1-201ENST00000494882 321 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 RNU6-120P-201ENST00000516077 103 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
COL3A1P02461 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.37□□□□□ -1.87
COL3A1P02461 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.37□□□□□ -1.87
COL3A1P02461 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC3.37□□□□□ -1.87
COL3A1P02461 SUB1P3-201ENST00000564581 315 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 MTND4LP5-201ENST00000605152 292 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 AC098479.1-201ENST00000609225 154 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 AL161423.1-201ENST00000613700 262 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL3A1P02461 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL3A1P02461 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL3A1P02461 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL3A1P02461 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.37□□□□□ -1.87
COL3A1P02461 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL3A1P02461 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
COL3A1P02461 AL137003.2-201ENST00000606924 2538 ntBASIC3.37□□□□□ -1.87
COL3A1P02461 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.36□□□□□ -1.87
COL3A1P02461 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL3A1P02461 Y_RNA.314-201ENST00000365114 102 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 RNU6-946P-201ENST00000383878 107 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 RNU6-472P-201ENST00000384299 107 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 RNU6-95P-201ENST00000384697 107 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.36□□□□□ -1.87
COL3A1P02461 RPL7P37-201ENST00000425095 738 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.36□□□□□ -1.87
COL3A1P02461 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.36□□□□□ -1.87
COL3A1P02461 AL645568.3-201ENST00000433683 316 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.36□□□□□ -1.87
COL3A1P02461 FABP5P13-201ENST00000452144 328 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 HSPE1P6-201ENST00000479457 291 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 AC108860.1-201ENST00000484521 383 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL3A1P02461 RNU6-1023P-201ENST00000516137 106 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 IGHV3-76-201ENST00000522465 295 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 DEFB108D-201ENST00000527787 222 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.36□□□□□ -1.87
COL3A1P02461 MIR3128-201ENST00000581957 66 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 AC137590.2-201ENST00000619709 240 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 MIR7843-201ENST00000622274 79 ntBASIC3.36□□□□□ -1.87
COL3A1P02461 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL3A1P02461 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL3A1P02461 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL3A1P02461 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
COL3A1P02461 RNU6-637P-201ENST00000384050 107 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 SNORA70B-201ENST00000384210 135 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 Y_RNA.461-201ENST00000384263 103 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 MIR592-201ENST00000384959 97 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 MIR27B-201ENST00000385129 97 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 RPL21P1-201ENST00000399532 476 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 RPL21P24-201ENST00000413752 448 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.35□□□□□ -1.87
COL3A1P02461 AC093106.2-201ENST00000428212 385 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AL603825.1-201ENST00000438481 80 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AL359672.1-201ENST00000442302 409 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AC087884.1-201ENST00000469738 328 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AP002884.2-201ENST00000471647 395 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.35□□□□□ -1.87
COL3A1P02461 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.35□□□□□ -1.87
COL3A1P02461 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.35□□□□□ -1.87
COL3A1P02461 SNORA40.14-201ENST00000516543 86 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 Y_RNA.715-201ENST00000517082 110 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.35□□□□□ -1.87
COL3A1P02461 RRN3P3-201ENST00000549207 578 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 NF1P5-201ENST00000588287 448 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AC174048.1-201ENST00000603389 144 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.35□□□□□ -1.87
COL3A1P02461 AC131238.1-201ENST00000617135 328 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AL590808.1-201ENST00000618696 141 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.35□□□□□ -1.87
COL3A1P02461 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL3A1P02461 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
COL3A1P02461 SNORA68.2-201ENST00000391263 128 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 SNORD88.1-201ENST00000408684 91 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AC243428.1-201ENST00000421099 264 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 RPL21P2-201ENST00000440049 481 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AC011005.2-201ENST00000487324 359 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 RPL30P11-201ENST00000495304 339 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms