Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 HSPE1P4-201ENST00000550617 308 ntBASIC3.43□□□□□ -1.86
DDX56Q9NY93 AC007375.1-201ENST00000554513 578 ntBASIC3.43□□□□□ -1.86
DDX56Q9NY93 AL020997.2-201ENST00000602607 184 ntBASIC3.43□□□□□ -1.86
DDX56Q9NY93 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
DDX56Q9NY93 AL159153.1-201ENST00000619688 317 ntBASIC3.43□□□□□ -1.86
DDX56Q9NY93 MIR5739-201ENST00000619803 80 ntBASIC3.43□□□□□ -1.86
DDX56Q9NY93 AC039056.2-201ENST00000622261 511 ntBASIC3.43□□□□□ -1.86
DDX56Q9NY93 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
DDX56Q9NY93 AL355596.1-201ENST00000565399 3996 ntBASIC3.43□□□□□ -1.86
DDX56Q9NY93 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
DDX56Q9NY93 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.43□□□□□ -1.86
DDX56Q9NY93 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
DDX56Q9NY93 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
DDX56Q9NY93 AC009541.1-201ENST00000438279 2662 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
DDX56Q9NY93 AC092268.1-201ENST00000342691 405 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 Y_RNA.263-201ENST00000364659 114 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 RNU4-56P-201ENST00000364700 142 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 Y_RNA.356-201ENST00000365475 113 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 MIR521-1-201ENST00000384902 87 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 RNA5SP293-201ENST00000410527 113 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.42□□□□□ -1.86
DDX56Q9NY93 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 AC244670.1-201ENST00000436879 112 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 RPL30P1-201ENST00000488676 339 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 AC140059.1-201ENST00000489238 361 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.42□□□□□ -1.86
DDX56Q9NY93 RNA5SP217-201ENST00000515959 91 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 ACA59.1-201ENST00000515966 143 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.42□□□□□ -1.86
DDX56Q9NY93 AC109329.2-201ENST00000519658 482 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 AC105029.1-201ENST00000520250 669 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.42□□□□□ -1.86
DDX56Q9NY93 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC3.42□□□□□ -1.86
DDX56Q9NY93 RAB11AP2-201ENST00000545905 639 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 MIR3136-201ENST00000583498 78 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 MIR4276-201ENST00000584832 70 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 POLR3GP2-201ENST00000588366 668 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.42□□□□□ -1.86
DDX56Q9NY93 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.42□□□□□ -1.86
DDX56Q9NY93 RPL30P11-203ENST00000598995 310 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.42□□□□□ -1.86
DDX56Q9NY93 AL157817.1-201ENST00000614264 790 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 AC012442.3-202ENST00000636742 206 ntBASIC3.42□□□□□ -1.86
DDX56Q9NY93 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.42□□□□□ -1.86
DDX56Q9NY93 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
DDX56Q9NY93 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.42□□□□□ -1.86
DDX56Q9NY93 MTND5P27-201ENST00000428871 1720 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.41□□□□□ -1.86
DDX56Q9NY93 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
DDX56Q9NY93 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
DDX56Q9NY93 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
DDX56Q9NY93 U3.13-201ENST00000364804 214 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 SNORD32A-201ENST00000364805 84 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 Y_RNA.529-201ENST00000384586 119 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 MIR517A-201ENST00000385001 87 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
DDX56Q9NY93 CBX3P9-201ENST00000402326 552 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 RNA5SP229-201ENST00000410809 99 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 RPL32P35-201ENST00000415214 394 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 RPL23AP95-201ENST00000426806 265 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.41□□□□□ -1.86
DDX56Q9NY93 MTND3P9-201ENST00000429526 346 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 CYP2C59P-201ENST00000457790 269 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 AL121594.1-201ENST00000475906 575 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.41□□□□□ -1.86
DDX56Q9NY93 AIG1P1-201ENST00000503376 148 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 SCARNA20.6-201ENST00000517251 106 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.41□□□□□ -1.86
DDX56Q9NY93 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.41□□□□□ -1.86
DDX56Q9NY93 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.41□□□□□ -1.86
DDX56Q9NY93 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.41□□□□□ -1.86
DDX56Q9NY93 RPS3AP23-202ENST00000574601 686 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 FGF7P1-201ENST00000582820 288 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.41□□□□□ -1.86
DDX56Q9NY93 AC104237.2-201ENST00000612456 443 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 AL161423.1-201ENST00000613700 262 ntBASIC3.41□□□□□ -1.86
DDX56Q9NY93 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.41□□□□□ -1.86
DDX56Q9NY93 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.86
DDX56Q9NY93 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.86
DDX56Q9NY93 RNU6-1285P-201ENST00000363480 105 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 Y_RNA.151-201ENST00000363566 112 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 RNA5SP50-201ENST00000363731 107 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 RNU6-593P-201ENST00000364716 112 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 RNA5SP240-201ENST00000365355 128 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
DDX56Q9NY93 MIR548K-201ENST00000408406 116 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 RNU2-63P-201ENST00000410792 194 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 RNU2-41P-201ENST00000410991 178 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 AL133396.1-201ENST00000432048 687 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC3.4□□□□□ -1.87
DDX56Q9NY93 AL031659.1-201ENST00000447075 539 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.4□□□□□ -1.87
DDX56Q9NY93 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.4□□□□□ -1.87
DDX56Q9NY93 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.4□□□□□ -1.87
DDX56Q9NY93 RN7SL542P-201ENST00000467147 294 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 MTND5P5-201ENST00000503764 376 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 RNU1-143P-201ENST00000516296 146 ntBASIC3.4□□□□□ -1.87
DDX56Q9NY93 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 168.2 ms