Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 MIR4509-1-201ENST00000618224 94 ntBASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 AC026585.1-201ENST00000619582 524 ntBASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
VCX3AQ9NNX9 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 RNU6-78P-201ENST00000362897 107 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 RNU6-112P-201ENST00000363599 104 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 RNU4-1-201ENST00000363925 141 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 SNORA62.1-201ENST00000364287 154 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 EEF1A1P40-201ENST00000412883 573 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 AL513185.2-201ENST00000425543 193 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 RPL37P21-201ENST00000435890 276 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 AL022238.1-201ENST00000442557 355 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 MTND5P2-201ENST00000442927 1142 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 AL049873.1-201ENST00000480540 376 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 RBBP4P6-201ENST00000508098 202 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 RNU5F-2P-201ENST00000516066 82 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 RNU6-250P-201ENST00000516958 103 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 SNORA77B-201ENST00000578179 125 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 MIR4422-201ENST00000581938 83 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 AP000654.2-201ENST00000605633 586 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 AL139286.2-201ENST00000606838 396 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 AC068205.3-201ENST00000636385 468 ntBASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
VCX3AQ9NNX9 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 MIR26B-201ENST00000362251 77 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 RNU6-371P-201ENST00000364283 108 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 SNORA24.1-201ENST00000384401 135 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 RNU6-906P-201ENST00000384700 70 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 SNORA12-201ENST00000391162 147 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AC007283.2-201ENST00000424739 197 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AC084290.1-201ENST00000434995 374 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 MTCO1P44-201ENST00000441935 243 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 HMGN2P18-201ENST00000450680 270 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AC112492.4-201ENST00000456549 352 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AC087477.1-201ENST00000465747 340 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AC099513.1-201ENST00000490423 301 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 MTND2P7-201ENST00000521337 640 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AC087441.2-201ENST00000529141 262 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 MIR4255-201ENST00000579351 72 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AC005786.1-201ENST00000588553 154 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AC105148.1-201ENST00000604961 409 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AC104073.3-201ENST00000610942 955 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AL031667.3-201ENST00000620124 655 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 AC097372.5-201ENST00000623665 376 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 LINC02555-201ENST00000563933 1951 ntBASIC1.26□□□□□ -2.21
VCX3AQ9NNX9 U8.1-201ENST00000362843 134 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 RNU6-203P-201ENST00000384038 104 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 SNORD26-201ENST00000384147 75 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 RNU6-296P-201ENST00000384608 107 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 MIR544A-201ENST00000384855 91 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 RN7SKP223-201ENST00000410582 62 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 RPL21P90-201ENST00000415692 466 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 RPS27AP14-201ENST00000422868 454 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 AL590556.1-201ENST00000423231 483 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 AL354695.1-201ENST00000427935 228 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 RNU6-333P-201ENST00000459117 107 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 YWHAEP4-201ENST00000505390 198 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 RNA5SP490-201ENST00000517141 136 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 SNORA31.24-201ENST00000517232 57 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 MTND4LP18-201ENST00000526864 291 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 AP003181.2-201ENST00000528941 181 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 AP002453.2-201ENST00000533503 320 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 AC068338.1-201ENST00000565567 176 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 AL050343.2-201ENST00000607338 280 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 AL157786.1-207ENST00000627771 695 ntBASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
VCX3AQ9NNX9 SNORD32B-201ENST00000364460 84 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 Y_RNA.332-201ENST00000365271 113 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 SNORA40.18-201ENST00000391200 128 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 RAP1BP3-201ENST00000407180 549 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 AL357139.1-201ENST00000407792 426 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 AL139415.2-201ENST00000431968 163 ntBASIC1.24□□□□□ -2.21
VCX3AQ9NNX9 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 159 ms