Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 uc_338.14-201ENST00000613162 166 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 AC103705.1-201ENST00000619013 241 ntBASIC2.23□□□□□ -2.05
LIME1Q9H400 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
LIME1Q9H400 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
LIME1Q9H400 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.23□□□□□ -2.05
LIME1Q9H400 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.23□□□□□ -2.05
LIME1Q9H400 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.22□□□□□ -2.05
LIME1Q9H400 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.22□□□□□ -2.05
LIME1Q9H400 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.22□□□□□ -2.05
LIME1Q9H400 AC010329.5-201ENST00000623497 2174 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 Y_RNA.231-201ENST00000364358 102 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 RNU6-1180P-201ENST00000364935 107 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 Y_RNA.599-201ENST00000410489 109 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 RNU6-1328P-201ENST00000410938 106 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.22□□□□□ -2.05
LIME1Q9H400 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.22□□□□□ -2.05
LIME1Q9H400 USP9YP27-201ENST00000418455 438 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.22□□□□□ -2.05
LIME1Q9H400 MTCO3P38-201ENST00000468910 766 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 MED28P2-201ENST00000475771 317 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 RPS29P25-201ENST00000481709 171 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 Y_RNA.654-201ENST00000497848 106 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 GZMAP1-201ENST00000503054 631 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.22□□□□□ -2.05
LIME1Q9H400 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.22□□□□□ -2.05
LIME1Q9H400 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.22□□□□□ -2.05
LIME1Q9H400 AP003033.1-201ENST00000527244 415 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.22□□□□□ -2.05
LIME1Q9H400 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.22□□□□□ -2.05
LIME1Q9H400 MIR4648-201ENST00000580107 72 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.22□□□□□ -2.05
LIME1Q9H400 MIR3670-2-201ENST00000582974 65 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 MIR3670-1-201ENST00000584160 65 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 MIR3670-3-201ENST00000584855 65 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 AC008121.1-201ENST00000603244 268 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 AL670379.10-201ENST00000604330 253 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 AL670379.9-201ENST00000605428 253 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 AC002044.1-201ENST00000606707 158 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 U2.17-201ENST00000611454 95 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 MIR3670-4-201ENST00000612260 65 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 AC011890.2-201ENST00000613393 294 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 MIR3688-2-201ENST00000636963 87 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
LIME1Q9H400 AC004520.1-201ENST00000608362 1413 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 HAUS6P2-201ENST00000433254 2404 ntBASIC2.22□□□□□ -2.05
LIME1Q9H400 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
LIME1Q9H400 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.22□□□□□ -2.05
LIME1Q9H400 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.21□□□□□ -2.05
LIME1Q9H400 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
LIME1Q9H400 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.21□□□□□ -2.06
LIME1Q9H400 Y_RNA.38-201ENST00000362617 102 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 RNU6-78P-201ENST00000362897 107 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 RNA5SP99-201ENST00000364020 114 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 RNU6-461P-201ENST00000364195 107 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 Y_RNA.256-201ENST00000364594 104 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 MIR548F1-201ENST00000408667 84 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.21□□□□□ -2.06
LIME1Q9H400 RNA5SP425-201ENST00000410336 112 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 RN7SKP223-201ENST00000410582 62 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 OR9R1P-201ENST00000412200 877 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 PGBD4P6-201ENST00000421501 610 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.21□□□□□ -2.06
LIME1Q9H400 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.21□□□□□ -2.06
LIME1Q9H400 SRIP2-201ENST00000428470 166 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.21□□□□□ -2.06
LIME1Q9H400 MTND3P16-201ENST00000452205 344 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 RNU6-1208P-201ENST00000459588 107 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 AL121769.1-201ENST00000469473 401 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 AC087884.1-201ENST00000469738 328 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.21□□□□□ -2.06
LIME1Q9H400 RN7SKP24-201ENST00000515888 284 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 SNORA43.2-201ENST00000516652 128 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
LIME1Q9H400 IGKV3-31-201ENST00000523109 329 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.21□□□□□ -2.06
LIME1Q9H400 HSPE1P20-201ENST00000538133 289 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 AC023050.3-201ENST00000541142 333 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 CR383656.8-201ENST00000549046 145 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 AC009163.5-201ENST00000575421 637 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 MIR4635-201ENST00000583759 79 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 OR1M4P-201ENST00000589199 287 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 VN1R80P-201ENST00000597126 338 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 DISC2.1-201ENST00000612827 205 ntBASIC2.21□□□□□ -2.06
LIME1Q9H400 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.21□□□□□ -2.06
LIME1Q9H400 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.21□□□□□ -2.06
LIME1Q9H400 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
LIME1Q9H400 OR4G1P-203ENST00000641984 1631 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.2□□□□□ -2.06
LIME1Q9H400 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.2□□□□□ -2.06
LIME1Q9H400 RNU6-534P-201ENST00000364877 106 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 RNU4-12P-201ENST00000365233 139 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 SET-203ENST00000372688 801 ntTSL 2 BASIC2.2□□□□□ -2.06
LIME1Q9H400 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
LIME1Q9H400 MIR518C-201ENST00000384822 101 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 SNORD37.1-201ENST00000390968 65 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.2□□□□□ -2.06
LIME1Q9H400 Y_RNA.619-201ENST00000410951 90 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 RN7SKP192-201ENST00000411291 327 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 POLHP1-201ENST00000411806 470 ntBASIC2.2□□□□□ -2.06
LIME1Q9H400 FCF1P9-201ENST00000412546 282 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 154.8 ms