Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 RNU6-1053P-201ENST00000515930 101 ntBASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 SNORA40.12-201ENST00000516329 111 ntBASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 ELOCP31-201ENST00000540463 467 ntBASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 MDM2-233ENST00000545204 398 ntTSL 5 BASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 AC011494.1-201ENST00000596454 237 ntBASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 AL162413.1-201ENST00000603198 110 ntBASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 AL627309.6-201ENST00000606857 840 ntBASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 AC092954.2-201ENST00000609103 430 ntBASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 MIR6134-201ENST00000617606 109 ntBASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 AL031601.2-202ENST00000622650 282 ntBASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 MIR7515-201ENST00000637837 67 ntBASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
ZNF541Q9H0D2 Y_RNA.6-201ENST00000362350 114 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 Z98749.2-208ENST00000381646 500 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 SNORA75B-201ENST00000384053 137 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 RNU6-192P-201ENST00000391253 100 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 SNORA11.4-201ENST00000408823 129 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AF274854.1-201ENST00000413236 615 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AL031779.1-201ENST00000415663 330 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 RPL7P37-201ENST00000425095 738 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AC092427.1-202ENST00000430569 476 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 SEPT14P3-201ENST00000439401 183 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 UBBP3-201ENST00000445497 241 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AL732372.2-207ENST00000445840 183 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 SEPT14P2-201ENST00000453405 183 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AC006026.2-201ENST00000457376 180 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AC079140.5-201ENST00000507882 310 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 SEPT14P4-201ENST00000513445 186 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 SNORD19.2-201ENST00000516978 73 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 FO082796.1-201ENST00000523795 183 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AP005435.4-201ENST00000529514 284 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AC010378.1-201ENST00000619270 362 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AC068137.3-201ENST00000639191 341 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AC073869.6-201ENST00000640656 341 ntBASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.7□□□□□ -1.98
ZNF541Q9H0D2 AL354685.2-201ENST00000448218 1447 ntBASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 RNU6-780P-201ENST00000391030 104 ntBASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 RAP1BP3-201ENST00000407180 549 ntBASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 AL353621.1-201ENST00000418219 243 ntBASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 AC019235.1-201ENST00000503847 207 ntBASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 ACA59.2-201ENST00000517061 156 ntBASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 COX6CP5-201ENST00000527162 228 ntBASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 OR5AQ1P-201ENST00000527596 927 ntBASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 MIR4781-201ENST00000585250 76 ntBASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 AC073539.2-201ENST00000597113 165 ntBASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 ZNF519P1-201ENST00000449011 1626 ntBASIC2.69□□□□□ -1.98
ZNF541Q9H0D2 Y_RNA.118-201ENST00000363300 101 ntBASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 SNORD14B-201ENST00000364533 90 ntBASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 Y_RNA.402-201ENST00000383972 102 ntBASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 Y_RNA.508-201ENST00000384502 114 ntBASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 RNU6-1127P-201ENST00000384580 107 ntBASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 Y_RNA.573-201ENST00000384763 105 ntBASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 MTCO1P20-201ENST00000425366 358 ntBASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 AL365400.1-201ENST00000431854 640 ntBASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.68□□□□□ -1.98
ZNF541Q9H0D2 MTND1P35-201ENST00000526739 508 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms