Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP48Q86UV5 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
USP48Q86UV5 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP48Q86UV5 AF127577.6-201ENST00000623352 2191 ntBASIC4.36□□□□□ -1.71
USP48Q86UV5 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP48Q86UV5 AC005592.1-201ENST00000566527 1640 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USP48Q86UV5 MTND5P9-201ENST00000503854 1755 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
USP48Q86UV5 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP48Q86UV5 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP48Q86UV5 RNU6-105P-201ENST00000363909 104 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 Y_RNA.188-201ENST00000363952 111 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 Y_RNA.510-201ENST00000384511 114 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 Y_RNA.512-201ENST00000384518 102 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 Y_RNA.577-201ENST00000384794 101 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 DBIP2-201ENST00000419076 262 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.35□□□□□ -1.71
USP48Q86UV5 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC4.35□□□□□ -1.71
USP48Q86UV5 NDUFB1P1-201ENST00000435191 180 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.35□□□□□ -1.71
USP48Q86UV5 RPL23AP49-201ENST00000492925 468 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 HSPE1P7-201ENST00000604681 321 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 AC107871.2-201ENST00000612894 502 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 HMGB1P24-202ENST00000615653 685 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 AC090617.7-201ENST00000623952 126 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 ZNF299P-201ENST00000406845 1804 ntBASIC4.35□□□□□ -1.71
USP48Q86UV5 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP48Q86UV5 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP48Q86UV5 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP48Q86UV5 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC4.34□□□□□ -1.71
USP48Q86UV5 RNU6-227P-201ENST00000362865 103 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 RNU6-238P-201ENST00000363313 106 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 RNU6-527P-201ENST00000363425 104 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 Y_RNA.533-201ENST00000384596 114 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 RNU6-1109P-201ENST00000391187 107 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 UBA52P6-201ENST00000399822 382 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 Y_RNA.618-201ENST00000410949 107 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4.34□□□□□ -1.71
USP48Q86UV5 RPL23AP82-202ENST00000427528 469 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC4.34□□□□□ -1.71
USP48Q86UV5 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
USP48Q86UV5 RPL23AP14-201ENST00000468281 468 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.34□□□□□ -1.71
USP48Q86UV5 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.34□□□□□ -1.71
USP48Q86UV5 SNORA31.18-201ENST00000517043 134 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 RNU6-1271P-201ENST00000517049 105 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 AP002404.1-201ENST00000532005 451 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.34□□□□□ -1.71
USP48Q86UV5 EIF4BP1-201ENST00000554881 351 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.34□□□□□ -1.71
USP48Q86UV5 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.34□□□□□ -1.71
USP48Q86UV5 AL158827.2-201ENST00000602494 330 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 MTND4LP5-201ENST00000605152 292 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 U7.8-201ENST00000619968 63 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 AL691447.3-201ENST00000635020 330 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 AP000553.6-201ENST00000641242 118 ntBASIC4.34□□□□□ -1.71
USP48Q86UV5 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
USP48Q86UV5 AL365361.1-201ENST00000566942 3481 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
USP48Q86UV5 AL136164.4-201ENST00000625013 2135 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 Y_RNA.39-201ENST00000362620 98 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 RNU6-450P-201ENST00000364654 107 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 RNU6-99P-201ENST00000364721 107 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 RNU6-823P-201ENST00000391042 103 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 AL138885.1-201ENST00000405921 675 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 AP000567.1-201ENST00000406413 156 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 AC009310.1-201ENST00000414414 451 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 AC125238.1-201ENST00000448842 249 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 CHEK2P4-201ENST00000450340 246 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 AC008011.1-201ENST00000545989 227 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 AL391261.3-201ENST00000557194 520 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 AL451007.1-201ENST00000595491 289 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 KLKP1-201ENST00000595979 403 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 AC011373.1-201ENST00000607270 237 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 MIR7851-201ENST00000610611 160 ntBASIC4.33□□□□□ -1.72
USP48Q86UV5 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.33□□□□□ -1.72
USP48Q86UV5 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
USP48Q86UV5 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
USP48Q86UV5 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
USP48Q86UV5 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.32□□□□□ -1.72
USP48Q86UV5 RNU6-942P-201ENST00000363002 107 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 U3.6-201ENST00000363622 211 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 Y_RNA.314-201ENST00000365114 102 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 RNU1-100P-201ENST00000365255 165 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 RNU6-1026P-201ENST00000384465 108 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
USP48Q86UV5 U3.19-201ENST00000390893 196 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 RNU2-23P-201ENST00000410545 195 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC4.32□□□□□ -1.72
USP48Q86UV5 USP9YP16-201ENST00000430287 407 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC4.32□□□□□ -1.72
USP48Q86UV5 USP9YP23-201ENST00000455085 407 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 RPS29P27-201ENST00000463711 170 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 RPS29P20-201ENST00000489592 171 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 AC105758.1-201ENST00000506038 399 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 RNU6-475P-201ENST00000516073 104 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 Y_RNA.668-201ENST00000516233 93 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 Y_RNA.721-201ENST00000517207 102 ntBASIC4.32□□□□□ -1.72
USP48Q86UV5 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms