Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.96□□□□□ -1.62
SH3RF1Q7Z6J0 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 AC008568.2-201ENST00000623862 2313 ntBASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-1181P-201ENST00000384191 106 ntBASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 PTMAP2-201ENST00000397627 327 ntBASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 EBAG9P1-201ENST00000418955 543 ntBASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-1211P-201ENST00000459179 105 ntBASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 RPL23AP14-201ENST00000468281 468 ntBASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 RPS26P28-201ENST00000470806 348 ntBASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 AC018448.1-201ENST00000552843 316 ntBASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 MIR6875-201ENST00000617506 72 ntBASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 MIR8059-201ENST00000620427 81 ntBASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
SH3RF1Q7Z6J0 MTND5P35-201ENST00000557537 1720 ntBASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 MARK2P15-201ENST00000432204 2186 ntBASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-942P-201ENST00000363002 107 ntBASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 Y_RNA.179-201ENST00000363844 90 ntBASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-335P-201ENST00000364563 113 ntBASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 ABCF2P2-201ENST00000450549 296 ntBASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 snoU13.4-201ENST00000458916 104 ntBASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 RNA5SP497-201ENST00000516081 97 ntBASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-703P-201ENST00000516946 107 ntBASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 UBE2Q2P6-201ENST00000612666 153 ntBASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 AC004467.1-201ENST00000615678 330 ntBASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
SH3RF1Q7Z6J0 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 RNU1-15P-201ENST00000353977 144 ntBASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-1141P-201ENST00000364520 107 ntBASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-140P-201ENST00000384566 108 ntBASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 MIR544A-201ENST00000384855 91 ntBASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 RPL23AP52-201ENST00000439311 478 ntBASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 AC074290.1-201ENST00000448883 135 ntBASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 MTATP6P7-201ENST00000453315 681 ntBASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 AC107027.2-201ENST00000512197 115 ntBASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 SNORA25.12-201ENST00000516202 82 ntBASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 RNU6-659P-201ENST00000516454 104 ntBASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 AC021231.3-201ENST00000558497 370 ntBASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 DEFB117-201ENST00000602356 141 ntBASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SH3RF1Q7Z6J0 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 Y_RNA.101-201ENST00000363154 102 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 RNU4-11P-201ENST00000365287 132 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 MIR3065-201ENST00000390137 79 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 MIR1911-201ENST00000410783 80 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 RPS29P7-201ENST00000439662 171 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 AL162151.2-201ENST00000448875 158 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 SNORA70.16-201ENST00000516390 95 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 RNU1-103P-201ENST00000516502 125 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 RN7SL703P-201ENST00000578485 302 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 MIR4431-201ENST00000579990 94 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 MIR4286-201ENST00000580651 93 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 AC004825.2-201ENST00000616634 455 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 uc_338.13-201ENST00000618243 179 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 AC091932.3-201ENST00000624223 323 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 AL034408.1-202ENST00000636088 415 ntBASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SH3RF1Q7Z6J0 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms