Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AP001596.2-201ENST00000608410 312 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC110792.4-201ENST00000609843 298 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC022202.1-201ENST00000613515 211 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC119674.1-220ENST00000641502 1048 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC092447.10-201ENST00000620607 1652 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
COL7A1Q02388 RNU6-252P-201ENST00000363232 107 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 Y_RNA.255-201ENST00000364581 97 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 RNU6-441P-201ENST00000384545 106 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 RNU6-1300P-201ENST00000391046 108 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 HMGN2P39-201ENST00000398005 273 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 MTND4LP11-201ENST00000422184 280 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AL589872.1-201ENST00000426602 288 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 FO393419.3-201ENST00000428741 282 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC005094.1-201ENST00000440420 368 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC002381.1-201ENST00000447049 280 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AL096803.2-201ENST00000450032 677 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 NDUFA5P7-201ENST00000452914 242 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC048334.1-201ENST00000477975 159 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AKIRIN2P1-201ENST00000505898 352 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC074344.1-201ENST00000512823 224 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 RNA5SP255-201ENST00000516370 107 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 SCARNA15.2-201ENST00000516409 127 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 RN7SKP287-201ENST00000516546 266 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 SNORD19.2-201ENST00000516978 73 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 RN7SKP256-201ENST00000517201 314 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC0.14□□□□□ -2.39
COL7A1Q02388 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.14□□□□□ -2.39
COL7A1Q02388 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC0.14□□□□□ -2.39
COL7A1Q02388 AC080013.4-201ENST00000607624 649 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AL355802.4-201ENST00000607635 548 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 uc_338.15-201ENST00000615470 191 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC136475.10-201ENST00000620253 385 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC123767.1-202ENST00000620407 817 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC004009.2-201ENST00000623016 728 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 MIR6516-201ENST00000630554 81 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 AC017104.5-201ENST00000637647 639 ntBASIC0.14□□□□□ -2.39
COL7A1Q02388 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.13□□□□□ -2.39
COL7A1Q02388 RNU6-119P-201ENST00000364882 107 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 RNU6-891P-201ENST00000384280 111 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 MIR605-201ENST00000385078 83 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 RNU11-3P-201ENST00000391111 133 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 RNU2-47P-201ENST00000410649 186 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC0.13□□□□□ -2.39
COL7A1Q02388 RPL22P18-201ENST00000417197 377 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 PDCL2P1-201ENST00000419302 352 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 RAC1P6-201ENST00000423911 575 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AC104651.1-201ENST00000427559 735 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC0.13□□□□□ -2.39
COL7A1Q02388 MTCYBP3-201ENST00000445588 1137 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 DDX3P2-201ENST00000446138 111 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC0.13□□□□□ -2.39
COL7A1Q02388 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC0.13□□□□□ -2.39
COL7A1Q02388 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC0.13□□□□□ -2.39
COL7A1Q02388 RNU6-885P-201ENST00000516607 104 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 HSPA8P13-201ENST00000523715 472 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.13□□□□□ -2.39
COL7A1Q02388 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.13□□□□□ -2.39
COL7A1Q02388 BNIP3P23-201ENST00000599655 511 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AC079791.1-201ENST00000605356 973 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AC092354.1-201ENST00000606057 376 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AC090772.4-201ENST00000623599 362 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AC092608.3-201ENST00000625017 386 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC0.13□□□□□ -2.39
COL7A1Q02388 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC0.13□□□□□ -2.39
COL7A1Q02388 MTND4P16-201ENST00000466108 1367 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 RNY4P27-201ENST00000363341 96 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 RNU6-968P-201ENST00000384076 107 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 Y_RNA.536-201ENST00000384621 113 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 SNORA32.3-201ENST00000384772 121 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 MIR597-201ENST00000384968 97 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 SNORD89-201ENST00000390981 114 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AC016831.2-201ENST00000417179 352 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AL590556.1-201ENST00000423231 483 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.13□□□□□ -2.39
COL7A1Q02388 MTND1P30-201ENST00000441241 901 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 RPS26P55-201ENST00000471178 356 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 COX6CP6-201ENST00000490840 228 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC0.13□□□□□ -2.39
COL7A1Q02388 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC0.13□□□□□ -2.39
COL7A1Q02388 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.13□□□□□ -2.39
COL7A1Q02388 AC110760.3-202ENST00000515177 371 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 SNORA68.3-201ENST00000515906 83 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC0.13□□□□□ -2.39
COL7A1Q02388 AP003122.4-201ENST00000530980 758 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC0.13□□□□□ -2.39
COL7A1Q02388 AC006199.1-201ENST00000548728 219 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC0.13□□□□□ -2.39
COL7A1Q02388 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC0.13□□□□□ -2.39
COL7A1Q02388 BPTFP1-201ENST00000579209 492 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AC091057.3-201ENST00000602684 733 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 AP000403.1-201ENST00000603349 851 ntBASIC0.13□□□□□ -2.39
COL7A1Q02388 MTCYBP22-201ENST00000603788 447 ntBASIC0.13□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms