Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC007098.1-201ENST00000420122 367 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 AC010099.3-201ENST00000423896 409 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 USP9YP12-201ENST00000450481 570 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 RPS29P29-201ENST00000456396 171 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 AC027575.1-201ENST00000481064 460 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 MTCYBP35-201ENST00000503630 1137 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.35□□□□□ -2.19
FOXA1P55317 RNU6-1053P-201ENST00000515930 101 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 RNU6-1129P-201ENST00000515964 104 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 EMP1-206ENST00000537612 505 ntTSL 3 BASIC1.35□□□□□ -2.19
FOXA1P55317 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC1.35□□□□□ -2.19
FOXA1P55317 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.35□□□□□ -2.19
FOXA1P55317 AC009094.1-201ENST00000564443 426 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 MTCYBP33-201ENST00000575007 1130 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 VN1R80P-201ENST00000597126 338 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 BNIP3P30-201ENST00000601184 574 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 NDUFA8P1-201ENST00000605525 367 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 AC093788.1-201ENST00000609356 927 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 MIR7974-201ENST00000615835 79 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 AC008121.3-201ENST00000618726 433 ntBASIC1.35□□□□□ -2.19
FOXA1P55317 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
FOXA1P55317 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.35□□□□□ -2.19
FOXA1P55317 MIR378A-201ENST00000362177 66 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 U8.1-201ENST00000362843 134 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 RNU1-23P-201ENST00000363361 144 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 SNORD14B-201ENST00000364533 90 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 RNU6-72P-201ENST00000384285 79 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 SNORA24.1-201ENST00000384401 135 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 MIR558-201ENST00000384920 94 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 MIR10A-201ENST00000385043 110 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
FOXA1P55317 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
FOXA1P55317 RNU2-39P-201ENST00000410604 198 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 AC008267.5-201ENST00000424928 265 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 AL627311.1-201ENST00000431514 115 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 RPS24P1-201ENST00000438550 371 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 SNRPGP13-201ENST00000442212 177 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 SNORA4.4-201ENST00000515921 135 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 SNORA48.11-201ENST00000517015 89 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.34□□□□□ -2.19
FOXA1P55317 AC022878.1-201ENST00000530684 149 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 AC233702.2-202ENST00000562547 291 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 AC068338.1-201ENST00000565567 176 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.34□□□□□ -2.19
FOXA1P55317 MIR548AC-201ENST00000585049 88 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 RPL30P11-203ENST00000598995 310 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 AL022161.1-201ENST00000604390 213 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 AL139286.2-201ENST00000606838 396 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 AL451064.1-201ENST00000607718 471 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 U6.42-201ENST00000618440 107 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 MIR3529-201ENST00000637713 78 ntBASIC1.34□□□□□ -2.19
FOXA1P55317 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.33□□□□□ -2.2
FOXA1P55317 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
FOXA1P55317 RNU6-661P-201ENST00000362409 107 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 Y_RNA.22-201ENST00000362492 102 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 RNU1-62P-201ENST00000362599 164 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 SNORA25B-201ENST00000365507 128 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 RNU6-641P-201ENST00000384006 107 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 U8.10-201ENST00000384260 133 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 RNU6-843P-201ENST00000384454 104 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 RNU1-57P-201ENST00000384491 166 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 RNU6-1179P-201ENST00000384667 107 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 MIR578-201ENST00000384828 96 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 MIR561-201ENST00000385216 97 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 RPL23AP32-201ENST00000395315 459 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 RNA5SP247-201ENST00000411181 105 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 UBE2V1P10-201ENST00000414685 269 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 MED13P1-201ENST00000428342 171 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.33□□□□□ -2.2
FOXA1P55317 DNAJC19P4-201ENST00000440115 345 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 UBE2D3P4-201ENST00000441973 436 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 CALM1P1-201ENST00000442082 433 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 NDUFB1P2-201ENST00000449477 176 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 ZNF736P8Y-201ENST00000451913 669 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 AC018868.1-201ENST00000491307 315 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 HMGB1P30-201ENST00000492455 606 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 RBBP4P6-201ENST00000508098 202 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 AC005178.1-201ENST00000508392 440 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 AC117522.1-201ENST00000509821 380 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 AC117532.1-201ENST00000514638 323 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 Y_RNA.672-201ENST00000516289 104 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 RNU6-1220P-201ENST00000517126 108 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 AC022616.3-201ENST00000523940 148 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.33□□□□□ -2.2
FOXA1P55317 RPL21P5-201ENST00000554662 472 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 AC090616.2-202ENST00000584248 222 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.33□□□□□ -2.2
FOXA1P55317 AC073410.2-201ENST00000603240 332 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 AL138889.2-201ENST00000603883 242 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 AC021646.1-201ENST00000605469 484 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 snoU13.31-201ENST00000607291 104 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 AC131159.1-201ENST00000621854 213 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 AL157786.1-207ENST00000627771 695 ntBASIC1.33□□□□□ -2.2
FOXA1P55317 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.33□□□□□ -2.2
FOXA1P55317 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
FOXA1P55317 RNU6-384P-201ENST00000364900 104 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
FOXA1P55317 MIR186-201ENST00000384988 86 ntBASIC1.32□□□□□ -2.2
FOXA1P55317 RPS3AP36-201ENST00000398190 775 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms