Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RNU6-903P-201ENST00000391270 109 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 RPL31P52-201ENST00000407532 367 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.07□□□□□ -2.08
COL4A4P53420 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.07□□□□□ -2.08
COL4A4P53420 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.07□□□□□ -2.08
COL4A4P53420 RSU1P2-202ENST00000437884 485 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 AC079781.2-201ENST00000446424 169 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC2.07□□□□□ -2.08
COL4A4P53420 RNU7-63P-201ENST00000459054 62 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 AC025033.1-201ENST00000463883 194 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 MRPS17P3-201ENST00000465453 385 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 MTCO1P29-201ENST00000496868 288 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 TMEM251P1-201ENST00000503717 318 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 AC110792.2-201ENST00000510278 224 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.07□□□□□ -2.08
COL4A4P53420 AC093677.1-201ENST00000514414 678 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 SMURF2P1-201ENST00000514992 481 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 RNU6-559P-201ENST00000516151 98 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.07□□□□□ -2.08
COL4A4P53420 AC022616.6-201ENST00000520479 119 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 HMGN1P28-201ENST00000521340 364 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 AC022790.1-201ENST00000522872 204 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC2.07□□□□□ -2.08
COL4A4P53420 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.07□□□□□ -2.08
COL4A4P53420 MIR4255-201ENST00000579351 72 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 MIR3668-201ENST00000582138 75 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 AL353997.4-201ENST00000586196 166 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 VN1R84P-201ENST00000593697 235 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.07□□□□□ -2.08
COL4A4P53420 SNRPGP19-201ENST00000603826 189 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 APOOP1-201ENST00000604695 592 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 HSPE1P14-201ENST00000605812 302 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 uc_338.11-201ENST00000619132 160 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 AC009318.4-201ENST00000620496 486 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.07□□□□□ -2.08
COL4A4P53420 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.07□□□□□ -2.08
COL4A4P53420 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2.07□□□□□ -2.08
COL4A4P53420 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
COL4A4P53420 OR4G1P-203ENST00000641984 1631 ntBASIC2.07□□□□□ -2.08
COL4A4P53420 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC2.07□□□□□ -2.08
COL4A4P53420 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.06□□□□□ -2.08
COL4A4P53420 Y_RNA.144-201ENST00000363521 113 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 RNA5SP160-201ENST00000364866 120 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 RNU6-1105P-201ENST00000384774 107 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 CISD1P1-201ENST00000393907 327 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 RPS12P24-201ENST00000412619 387 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC074085.1-201ENST00000413598 418 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC113618.1-201ENST00000416747 285 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AL451054.2-201ENST00000420896 202 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.06□□□□□ -2.08
COL4A4P53420 PMCHL1-202ENST00000423102 261 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.06□□□□□ -2.08
COL4A4P53420 TIMM9P1-201ENST00000436122 256 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.06□□□□□ -2.08
COL4A4P53420 RPS15AP1-201ENST00000457423 391 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC026410.2-201ENST00000460281 156 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AL121594.1-201ENST00000475906 575 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC034222.1-201ENST00000494052 532 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC135721.1-201ENST00000497954 479 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC2.06□□□□□ -2.08
COL4A4P53420 RNU6-1314P-201ENST00000517139 104 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 SNORA31.26-201ENST00000517250 137 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.06□□□□□ -2.08
COL4A4P53420 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC2.06□□□□□ -2.08
COL4A4P53420 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.06□□□□□ -2.08
COL4A4P53420 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.06□□□□□ -2.08
COL4A4P53420 AC022616.3-201ENST00000523940 148 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.06□□□□□ -2.08
COL4A4P53420 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.06□□□□□ -2.08
COL4A4P53420 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC2.06□□□□□ -2.08
COL4A4P53420 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC2.06□□□□□ -2.08
COL4A4P53420 SULT1C2P1-202ENST00000562418 459 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 FRG2DP-202ENST00000566967 323 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 MIR3146-201ENST00000580367 79 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 RPL23AP78-201ENST00000599928 470 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.06□□□□□ -2.08
COL4A4P53420 AC080078.3-201ENST00000605407 463 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AP000654.2-201ENST00000605633 586 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC005296.1-201ENST00000616145 209 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC040168.1-201ENST00000623594 991 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.06□□□□□ -2.08
COL4A4P53420 MTND4P14-201ENST00000435799 1354 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.06□□□□□ -2.08
COL4A4P53420 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
COL4A4P53420 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
COL4A4P53420 RNU6-1318P-201ENST00000365389 103 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 RNU4-48P-201ENST00000365559 182 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 RNU6-1013P-201ENST00000384180 107 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 RNU6-606P-201ENST00000384721 111 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AL359634.1-202ENST00000404721 284 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 RNU6-985P-201ENST00000410182 104 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 MTCYBP8-201ENST00000422855 651 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AL160004.2-201ENST00000432935 350 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.06□□□□□ -2.08
COL4A4P53420 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.06□□□□□ -2.08
COL4A4P53420 AL035666.1-201ENST00000446195 348 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.06□□□□□ -2.08
COL4A4P53420 AC012181.1-201ENST00000479895 423 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 MTCO2P24-201ENST00000515611 426 ntBASIC2.06□□□□□ -2.08
COL4A4P53420 RNU6-488P-201ENST00000515918 99 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms