Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RNA5SP148-201ENST00000516527 94 ntBASIC2.38□□□□□ -2.03
SOX3P41225 RNU6-1069P-201ENST00000516612 133 ntBASIC2.38□□□□□ -2.03
SOX3P41225 ACA59.2-201ENST00000517061 156 ntBASIC2.38□□□□□ -2.03
SOX3P41225 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.38□□□□□ -2.03
SOX3P41225 AC069113.1-201ENST00000517763 267 ntBASIC2.38□□□□□ -2.03
SOX3P41225 AP004607.1-201ENST00000524456 203 ntBASIC2.38□□□□□ -2.03
SOX3P41225 BNIP3P25-201ENST00000596023 559 ntBASIC2.38□□□□□ -2.03
SOX3P41225 APOOP1-201ENST00000604695 592 ntBASIC2.38□□□□□ -2.03
SOX3P41225 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
SOX3P41225 AC011890.2-201ENST00000613393 294 ntBASIC2.38□□□□□ -2.03
SOX3P41225 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.38□□□□□ -2.03
SOX3P41225 ZNF519P1-201ENST00000449011 1626 ntBASIC2.38□□□□□ -2.03
SOX3P41225 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
SOX3P41225 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
SOX3P41225 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
SOX3P41225 SNORD56.5-201ENST00000364281 72 ntBASIC2.37□□□□□ -2.03
SOX3P41225 Y_RNA.373-201ENST00000365600 103 ntBASIC2.37□□□□□ -2.03
SOX3P41225 RNU6-19P-201ENST00000384718 107 ntBASIC2.37□□□□□ -2.03
SOX3P41225 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2.37□□□□□ -2.03
SOX3P41225 MTND1P23-201ENST00000416931 372 ntBASIC2.37□□□□□ -2.03
SOX3P41225 AC011816.1-201ENST00000441346 546 ntBASIC2.37□□□□□ -2.03
SOX3P41225 OSTCP8-201ENST00000445117 448 ntBASIC2.37□□□□□ -2.03
SOX3P41225 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.37□□□□□ -2.03
SOX3P41225 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
SOX3P41225 AC133134.1-201ENST00000466800 359 ntBASIC2.37□□□□□ -2.03
SOX3P41225 AC117503.1-201ENST00000472241 394 ntBASIC2.37□□□□□ -2.03
SOX3P41225 AC083904.1-201ENST00000487828 231 ntBASIC2.37□□□□□ -2.03
SOX3P41225 AIG1P1-201ENST00000503376 148 ntBASIC2.37□□□□□ -2.03
SOX3P41225 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
SOX3P41225 AC243972.3-201ENST00000539655 198 ntBASIC2.37□□□□□ -2.03
SOX3P41225 AC023050.3-201ENST00000541142 333 ntBASIC2.37□□□□□ -2.03
SOX3P41225 CR383656.8-201ENST00000549046 145 ntBASIC2.37□□□□□ -2.03
SOX3P41225 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.37□□□□□ -2.03
SOX3P41225 MIR4513-201ENST00000581077 86 ntBASIC2.37□□□□□ -2.03
SOX3P41225 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC2.37□□□□□ -2.03
SOX3P41225 AC020895.1-201ENST00000595362 272 ntBASIC2.37□□□□□ -2.03
SOX3P41225 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.37□□□□□ -2.03
SOX3P41225 RBM11P1-201ENST00000604951 799 ntBASIC2.37□□□□□ -2.03
SOX3P41225 AC006504.8-201ENST00000621046 635 ntBASIC2.37□□□□□ -2.03
SOX3P41225 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
SOX3P41225 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
SOX3P41225 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
SOX3P41225 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.37□□□□□ -2.03
SOX3P41225 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.36□□□□□ -2.03
SOX3P41225 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
SOX3P41225 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-37P-201ENST00000362692 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 Y_RNA.100-201ENST00000363141 102 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-11P-201ENST00000364234 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-25P-201ENST00000383873 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-1-201ENST00000383898 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-48P-201ENST00000384161 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-36P-201ENST00000384172 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-4P-201ENST00000384205 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-5P-201ENST00000384238 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-3P-201ENST00000384314 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-16P-201ENST00000384385 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-15P-201ENST00000384534 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-2-201ENST00000384627 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-29P-201ENST00000384637 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-9-201ENST00000384776 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-33P-201ENST00000384793 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 HMGN2P35-201ENST00000412164 270 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RPL30P16-201ENST00000419341 429 ntBASIC2.36□□□□□ -2.03
SOX3P41225 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.36□□□□□ -2.03
SOX3P41225 PTGES3P4-201ENST00000426243 356 ntBASIC2.36□□□□□ -2.03
SOX3P41225 AC006026.2-201ENST00000457376 180 ntBASIC2.36□□□□□ -2.03
SOX3P41225 AC007547.1-201ENST00000462177 490 ntBASIC2.36□□□□□ -2.03
SOX3P41225 MRPL42P6-201ENST00000486397 371 ntBASIC2.36□□□□□ -2.03
SOX3P41225 FAM206BP-201ENST00000510179 541 ntBASIC2.36□□□□□ -2.03
SOX3P41225 MRPS36P2-201ENST00000512569 299 ntBASIC2.36□□□□□ -2.03
SOX3P41225 SNORA43.2-201ENST00000516652 128 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RPL7P20-201ENST00000520308 745 ntBASIC2.36□□□□□ -2.03
SOX3P41225 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.36□□□□□ -2.03
SOX3P41225 PSMA3P-201ENST00000555485 635 ntBASIC2.36□□□□□ -2.03
SOX3P41225 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.36□□□□□ -2.03
SOX3P41225 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.36□□□□□ -2.03
SOX3P41225 AP001094.1-201ENST00000579805 193 ntBASIC2.36□□□□□ -2.03
SOX3P41225 AC008121.1-201ENST00000603244 268 ntBASIC2.36□□□□□ -2.03
SOX3P41225 AC123912.5-201ENST00000605470 343 ntBASIC2.36□□□□□ -2.03
SOX3P41225 RNU6-6P-201ENST00000606623 107 ntBASIC2.36□□□□□ -2.03
SOX3P41225 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.36□□□□□ -2.03
SOX3P41225 AL137847.3-201ENST00000611521 109 ntBASIC2.36□□□□□ -2.03
SOX3P41225 IGHVIII-44-202ENST00000636235 289 ntBASIC2.36□□□□□ -2.03
SOX3P41225 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
SOX3P41225 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.36□□□□□ -2.03
SOX3P41225 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
SOX3P41225 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
SOX3P41225 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
SOX3P41225 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.35□□□□□ -2.03
SOX3P41225 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
SOX3P41225 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
SOX3P41225 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
SOX3P41225 Y_RNA.390-201ENST00000383932 102 ntBASIC2.35□□□□□ -2.03
SOX3P41225 Y_RNA.530-201ENST00000384587 101 ntBASIC2.35□□□□□ -2.03
SOX3P41225 RNU6-748P-201ENST00000384648 107 ntBASIC2.35□□□□□ -2.03
SOX3P41225 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
SOX3P41225 FGF7P8-201ENST00000402994 292 ntBASIC2.35□□□□□ -2.03
SOX3P41225 SNORD56-201ENST00000413522 71 ntBASIC2.35□□□□□ -2.03
SOX3P41225 NDUFA5P4-201ENST00000436704 385 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms