Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SNORA40C-201ENST00000391285 128 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 EBAG9P1-201ENST00000418955 543 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 AL591704.2-201ENST00000421658 181 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC1.31□□□□□ -2.2
COL18A1P39060 LARP1BP3-201ENST00000437229 869 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 MTATP6P14-201ENST00000455189 673 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 MTND1P3-201ENST00000484956 952 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
COL18A1P39060 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC1.31□□□□□ -2.2
COL18A1P39060 AC009902.1-201ENST00000519351 183 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 AC008749.1-201ENST00000597650 306 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 ZNF736P9Y-201ENST00000439586 1345 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 ZNF702P-202ENST00000434269 1966 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 CISD1P1-201ENST00000393907 327 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC1.31□□□□□ -2.2
COL18A1P39060 AC009518.2-201ENST00000418056 731 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.31□□□□□ -2.2
COL18A1P39060 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC1.31□□□□□ -2.2
COL18A1P39060 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC1.31□□□□□ -2.2
COL18A1P39060 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.31□□□□□ -2.2
COL18A1P39060 RPL23AP6-201ENST00000446637 472 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.31□□□□□ -2.2
COL18A1P39060 AC003071.1-201ENST00000451219 789 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 AL139824.2-201ENST00000458731 1095 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 RNU6-1132P-201ENST00000459214 107 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 RPL7P43-201ENST00000478876 753 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 Y_RNA.681-201ENST00000516445 113 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 AC107953.1-201ENST00000522216 297 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC1.31□□□□□ -2.2
COL18A1P39060 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.31□□□□□ -2.2
COL18A1P39060 AC017037.3-201ENST00000625016 472 ntBASIC1.31□□□□□ -2.2
COL18A1P39060 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC1.31□□□□□ -2.2
COL18A1P39060 RNU6-960P-201ENST00000364056 120 ntBASIC1.3□□□□□ -2.2
COL18A1P39060 Y_RNA.433-201ENST00000384089 102 ntBASIC1.3□□□□□ -2.2
COL18A1P39060 MIR216A-201ENST00000385063 110 ntBASIC1.3□□□□□ -2.2
COL18A1P39060 HMGN2P39-201ENST00000398005 273 ntBASIC1.3□□□□□ -2.2
COL18A1P39060 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.3□□□□□ -2.2
COL18A1P39060 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.3□□□□□ -2.2
COL18A1P39060 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC1.3□□□□□ -2.2
COL18A1P39060 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC1.3□□□□□ -2.2
COL18A1P39060 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.3□□□□□ -2.2
COL18A1P39060 RNU6-1003P-201ENST00000517099 105 ntBASIC1.3□□□□□ -2.2
COL18A1P39060 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC1.3□□□□□ -2.2
COL18A1P39060 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.3□□□□□ -2.2
COL18A1P39060 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC1.3□□□□□ -2.2
COL18A1P39060 AC007363.1-201ENST00000604736 620 ntBASIC1.3□□□□□ -2.2
COL18A1P39060 AC018638.7-201ENST00000605836 1114 ntBASIC1.3□□□□□ -2.2
COL18A1P39060 AC107952.2-201ENST00000606048 486 ntBASIC1.3□□□□□ -2.2
COL18A1P39060 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC1.3□□□□□ -2.2
COL18A1P39060 AC092140.2-201ENST00000618027 521 ntBASIC1.3□□□□□ -2.2
COL18A1P39060 U3.13-201ENST00000364804 214 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 RNU5E-6P-201ENST00000365574 115 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 RNU6-636P-201ENST00000384598 107 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 MIR518D-201ENST00000385014 87 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 RNA5SP212-201ENST00000391223 107 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 FTH1P15-201ENST00000406984 280 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AC138623.1-201ENST00000418060 216 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AL158823.1-201ENST00000418441 478 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.29□□□□□ -2.2
COL18A1P39060 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC1.29□□□□□ -2.2
COL18A1P39060 AL596276.1-201ENST00000434465 418 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.29□□□□□ -2.2
COL18A1P39060 USP9YP25-201ENST00000457708 443 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.29□□□□□ -2.2
COL18A1P39060 SNORA31.19-201ENST00000517079 126 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 RNU6-201P-201ENST00000517100 61 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AC013828.2-201ENST00000532487 235 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.29□□□□□ -2.2
COL18A1P39060 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC1.29□□□□□ -2.2
COL18A1P39060 BCRP9-201ENST00000605312 388 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AC091965.4-201ENST00000607691 587 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AL157392.4-201ENST00000609756 345 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
COL18A1P39060 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC1.29□□□□□ -2.2
COL18A1P39060 AC006927.4-201ENST00000639187 543 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 RNA5SP62-201ENST00000363457 110 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 RNA5SP457-201ENST00000363657 124 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC1.29□□□□□ -2.2
COL18A1P39060 RNU6-757P-201ENST00000410334 100 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 RNU6-1025P-201ENST00000410629 104 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC1.29□□□□□ -2.2
COL18A1P39060 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.29□□□□□ -2.2
COL18A1P39060 AC084290.1-201ENST00000434995 374 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 ZNF736P11Y-201ENST00000442535 1213 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AC114801.2-201ENST00000503825 781 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 RNU6-677P-201ENST00000516914 101 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 RNU6-1315P-201ENST00000517187 99 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AC105185.1-201ENST00000518705 535 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 HSPE1P4-201ENST00000550617 308 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.29□□□□□ -2.2
COL18A1P39060 AL713866.2-201ENST00000603579 219 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 SNRPGP17-201ENST00000603780 214 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 RNU4-5P-201ENST00000607255 135 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AC022893.3-201ENST00000607665 437 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AC009974.1-201ENST00000608881 455 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AL773524.1-201ENST00000614065 229 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 AP000484.1-201ENST00000620067 1252 ntBASIC1.29□□□□□ -2.2
COL18A1P39060 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.29□□□□□ -2.2
COL18A1P39060 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms