Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
SMARCA1P28370 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.51□□□□□ -1.85
SMARCA1P28370 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.51□□□□□ -1.85
SMARCA1P28370 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
SMARCA1P28370 RNU6-593P-201ENST00000364716 112 ntBASIC3.5□□□□□ -1.85
SMARCA1P28370 CD24P4-201ENST00000382840 243 ntBASIC3.5□□□□□ -1.85
SMARCA1P28370 SNORA48.5-201ENST00000391143 135 ntBASIC3.5□□□□□ -1.85
SMARCA1P28370 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
SMARCA1P28370 RNU6-1050P-201ENST00000410388 107 ntBASIC3.5□□□□□ -1.85
SMARCA1P28370 AL030996.1-201ENST00000411430 235 ntBASIC3.5□□□□□ -1.85
SMARCA1P28370 AL031274.1-201ENST00000450334 232 ntBASIC3.5□□□□□ -1.85
SMARCA1P28370 RNU7-152P-201ENST00000458982 64 ntBASIC3.5□□□□□ -1.85
SMARCA1P28370 AC117440.1-201ENST00000474107 571 ntBASIC3.5□□□□□ -1.85
SMARCA1P28370 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.5□□□□□ -1.85
SMARCA1P28370 TRAV32-201ENST00000553993 340 ntBASIC3.5□□□□□ -1.85
SMARCA1P28370 MIR5690-201ENST00000583739 73 ntBASIC3.5□□□□□ -1.85
SMARCA1P28370 AP000654.2-201ENST00000605633 586 ntBASIC3.5□□□□□ -1.85
SMARCA1P28370 AC244517.12-201ENST00000623581 663 ntBASIC3.5□□□□□ -1.85
SMARCA1P28370 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
SMARCA1P28370 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.5□□□□□ -1.85
SMARCA1P28370 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
SMARCA1P28370 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.49□□□□□ -1.85
SMARCA1P28370 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.49□□□□□ -1.85
SMARCA1P28370 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
SMARCA1P28370 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.49□□□□□ -1.85
SMARCA1P28370 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
SMARCA1P28370 RNU1-140P-201ENST00000365040 165 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 Y_RNA.315-201ENST00000365117 102 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 RNU6-827P-201ENST00000365553 106 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 RNU6-898P-201ENST00000365627 104 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 RNU6-1227P-201ENST00000383981 107 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 RNU6-310P-201ENST00000384655 107 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 SNORA75.4-201ENST00000391278 119 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 MTCYBP4-201ENST00000401524 249 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 RNA5SP274-201ENST00000410484 108 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 Y_RNA.646-201ENST00000410980 101 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 Z92545.1-201ENST00000411782 234 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 AC096664.2-201ENST00000411843 406 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.49□□□□□ -1.85
SMARCA1P28370 AL117339.3-201ENST00000418733 162 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 AL365496.1-201ENST00000426885 215 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 USP9YP30-201ENST00000430729 455 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 MTCO3P10-201ENST00000455912 772 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 RPL26P9-201ENST00000457466 433 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 AC027575.1-201ENST00000481064 460 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.49□□□□□ -1.85
SMARCA1P28370 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.49□□□□□ -1.85
SMARCA1P28370 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
SMARCA1P28370 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.49□□□□□ -1.85
SMARCA1P28370 Y_RNA.670-201ENST00000516255 105 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 RNA5SP341-201ENST00000516261 117 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 RN7SKP282-201ENST00000516824 299 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 AC068657.1-201ENST00000520807 306 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.49□□□□□ -1.85
SMARCA1P28370 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.49□□□□□ -1.85
SMARCA1P28370 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC3.49□□□□□ -1.85
SMARCA1P28370 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 AC018462.2-201ENST00000605375 395 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 AC009229.3-201ENST00000608056 282 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 AC019193.3-201ENST00000609144 554 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 AL669831.3-213ENST00000636676 183 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 KPNA2P1-201ENST00000458289 1591 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 AC096644.4-201ENST00000563417 2912 ntBASIC3.49□□□□□ -1.85
SMARCA1P28370 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SMARCA1P28370 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.48□□□□□ -1.85
SMARCA1P28370 RNU6-1059P-201ENST00000363752 98 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 Y_RNA.404-201ENST00000383978 102 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 RNU6-851P-201ENST00000384565 107 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 SNORA46-201ENST00000384762 135 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 SNORA48.2-201ENST00000390926 124 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 Y_RNA.594-201ENST00000410373 140 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 NDUFS5P4-201ENST00000412983 318 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
SMARCA1P28370 TOMM20P4-201ENST00000427861 435 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 AC005534.2-201ENST00000431047 433 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 MTCYBP6-201ENST00000441810 138 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 FTH1P25-201ENST00000447665 469 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 RPL37P4-201ENST00000448908 268 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.48□□□□□ -1.85
SMARCA1P28370 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
SMARCA1P28370 RPL30P15-201ENST00000457129 321 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 SNORD5.1-201ENST00000458800 75 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.48□□□□□ -1.85
SMARCA1P28370 AC018437.1-201ENST00000492214 406 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.48□□□□□ -1.85
SMARCA1P28370 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.48□□□□□ -1.85
SMARCA1P28370 AC103996.1-201ENST00000555468 102 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 AC078899.3-201ENST00000599065 212 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 AC093732.2-201ENST00000607950 274 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.48□□□□□ -1.85
SMARCA1P28370 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
SMARCA1P28370 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
SMARCA1P28370 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.48□□□□□ -1.85
SMARCA1P28370 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.47□□□□□ -1.85
SMARCA1P28370 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.47□□□□□ -1.85
SMARCA1P28370 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.47□□□□□ -1.85
SMARCA1P28370 AL353743.1-202ENST00000431724 1695 ntBASIC3.47□□□□□ -1.85
SMARCA1P28370 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
SMARCA1P28370 AC008669.1-201ENST00000565823 2178 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms