Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.96□□□□□ -2.26
HLA-DMBP28068 MIR412-201ENST00000362142 91 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 RNA5SP493-201ENST00000364115 91 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 RNU5E-6P-201ENST00000365574 115 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 SNORD116-12-201ENST00000384468 92 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 RNU6-939P-201ENST00000384634 107 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 NCOR1P3-201ENST00000420479 303 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 ISCA1P6-201ENST00000427740 390 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 AL627311.1-201ENST00000431514 115 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC0.95□□□□□ -2.26
HLA-DMBP28068 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 CALM1P1-201ENST00000442082 433 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC0.95□□□□□ -2.26
HLA-DMBP28068 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC0.95□□□□□ -2.26
HLA-DMBP28068 AC093899.1-201ENST00000457984 376 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 RPL30P1-201ENST00000488676 339 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 MTND2P31-201ENST00000512602 616 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
HLA-DMBP28068 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC0.95□□□□□ -2.26
HLA-DMBP28068 AC068587.4-201ENST00000533893 186 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC0.95□□□□□ -2.26
HLA-DMBP28068 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.95□□□□□ -2.26
HLA-DMBP28068 SNORA77B-201ENST00000578179 125 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 AL050343.2-201ENST00000607338 280 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 uc_338.12-201ENST00000616344 181 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC0.95□□□□□ -2.26
HLA-DMBP28068 AC008993.2-201ENST00000631744 806 ntBASIC0.95□□□□□ -2.26
HLA-DMBP28068 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC0.95□□□□□ -2.26
HLA-DMBP28068 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC0.95□□□□□ -2.26
HLA-DMBP28068 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
HLA-DMBP28068 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
HLA-DMBP28068 RNU6-23P-201ENST00000363283 107 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.94□□□□□ -2.26
HLA-DMBP28068 RNU6-160P-201ENST00000384591 107 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 RNU2-41P-201ENST00000410991 178 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 ELOCP17-201ENST00000414751 326 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 AC092809.3-201ENST00000415453 231 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 ELOCP9-201ENST00000418624 239 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 RPS15AP10-201ENST00000432472 382 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.94□□□□□ -2.26
HLA-DMBP28068 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.94□□□□□ -2.26
HLA-DMBP28068 AC087477.1-201ENST00000465747 340 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC0.94□□□□□ -2.26
HLA-DMBP28068 AC119751.4-201ENST00000507498 357 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC0.94□□□□□ -2.26
HLA-DMBP28068 RNU6-1092P-201ENST00000516955 87 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 AP003168.1-201ENST00000530091 307 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 AP004247.1-201ENST00000531556 1289 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 AC092451.2-201ENST00000538746 658 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
HLA-DMBP28068 AC005668.1-201ENST00000571142 476 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC0.94□□□□□ -2.26
HLA-DMBP28068 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC0.94□□□□□ -2.26
HLA-DMBP28068 AC078795.2-201ENST00000602835 1252 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 AL138889.2-201ENST00000603883 242 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 AC123912.5-201ENST00000605470 343 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 PART1_2.1-201ENST00000612397 250 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 AC091895.1-201ENST00000624494 256 ntBASIC0.94□□□□□ -2.26
HLA-DMBP28068 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.93□□□□□ -2.26
HLA-DMBP28068 MIR302D-201ENST00000362275 68 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 RNU6-271P-201ENST00000363858 105 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 RNU6-960P-201ENST00000364056 120 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 RNU6-743P-201ENST00000364151 106 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 SNORD14B-201ENST00000364533 90 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 RNU6-392P-201ENST00000364926 101 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 RNY3P13-201ENST00000365542 102 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 RNU6-723P-201ENST00000383973 107 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 RNU6-190P-201ENST00000384154 102 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 SNORA40.6-201ENST00000391153 128 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 RNU2-62P-201ENST00000410868 191 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 RNA5SP247-201ENST00000411181 105 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC0.93□□□□□ -2.26
HLA-DMBP28068 AC069282.1-201ENST00000411911 526 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 AL669831.1-202ENST00000428504 417 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 RPS6P15-201ENST00000431996 751 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 MTND2P4-201ENST00000445034 1004 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC0.93□□□□□ -2.26
HLA-DMBP28068 RNU6-333P-201ENST00000459117 107 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 RPL36AP21-201ENST00000490372 323 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC0.93□□□□□ -2.26
HLA-DMBP28068 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.93□□□□□ -2.26
HLA-DMBP28068 AL356057.1-201ENST00000533798 831 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC0.93□□□□□ -2.26
HLA-DMBP28068 AC002400.1-201ENST00000569310 726 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 AC137800.2-201ENST00000574375 120 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 MIR3146-201ENST00000580367 79 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 AC005786.1-201ENST00000588553 154 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 AL355816.2-201ENST00000610049 647 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 AC022513.1-201ENST00000624512 117 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 SCARNA4-202ENST00000625402 129 ntBASIC0.93□□□□□ -2.26
HLA-DMBP28068 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
HLA-DMBP28068 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.92□□□□□ -2.26
HLA-DMBP28068 AC099786.3-201ENST00000565735 1410 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
HLA-DMBP28068 snoU2_19.1-201ENST00000362361 80 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 SNORD3E-201ENST00000362899 217 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 RNU6-946P-201ENST00000383878 107 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 Y_RNA.465-201ENST00000384293 102 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 SNORD116-20-201ENST00000384529 92 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 156.9 ms