Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL157786.1-207ENST00000627771 695 ntBASIC1.56□□□□□ -2.16
USF1P22415 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.56□□□□□ -2.16
USF1P22415 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
USF1P22415 RNU5F-7P-201ENST00000363696 115 ntBASIC1.55□□□□□ -2.16
USF1P22415 Y_RNA.164-201ENST00000363709 102 ntBASIC1.55□□□□□ -2.16
USF1P22415 RNU6-384P-201ENST00000364900 104 ntBASIC1.55□□□□□ -2.16
USF1P22415 RNU5E-5P-201ENST00000365379 116 ntBASIC1.55□□□□□ -2.16
USF1P22415 RNU6-641P-201ENST00000384006 107 ntBASIC1.55□□□□□ -2.16
USF1P22415 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.55□□□□□ -2.16
USF1P22415 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
USF1P22415 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
USF1P22415 AL356432.1-201ENST00000405809 419 ntBASIC1.55□□□□□ -2.16
USF1P22415 AC244636.1-201ENST00000421152 228 ntBASIC1.55□□□□□ -2.16
USF1P22415 USP9YP18-201ENST00000425912 695 ntBASIC1.55□□□□□ -2.16
USF1P22415 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.55□□□□□ -2.16
USF1P22415 MTND2P29-201ENST00000438595 412 ntBASIC1.55□□□□□ -2.16
USF1P22415 AC245102.2-201ENST00000448956 180 ntBASIC1.55□□□□□ -2.16
USF1P22415 AC107393.1-201ENST00000512403 346 ntBASIC1.55□□□□□ -2.16
USF1P22415 AC117532.1-201ENST00000514638 323 ntBASIC1.55□□□□□ -2.16
USF1P22415 AP003392.2-201ENST00000527269 208 ntBASIC1.55□□□□□ -2.16
USF1P22415 AC022878.1-201ENST00000530684 149 ntBASIC1.55□□□□□ -2.16
USF1P22415 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.55□□□□□ -2.16
USF1P22415 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.55□□□□□ -2.16
USF1P22415 BNIP3P6-201ENST00000549284 499 ntBASIC1.55□□□□□ -2.16
USF1P22415 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.55□□□□□ -2.16
USF1P22415 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.55□□□□□ -2.16
USF1P22415 MIR3683-201ENST00000580847 82 ntBASIC1.55□□□□□ -2.16
USF1P22415 CLIC4P2-201ENST00000601934 717 ntBASIC1.55□□□□□ -2.16
USF1P22415 AC012360.2-201ENST00000609349 391 ntBASIC1.55□□□□□ -2.16
USF1P22415 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
USF1P22415 AC007792.1-201ENST00000623023 402 ntBASIC1.55□□□□□ -2.16
USF1P22415 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
USF1P22415 Y_RNA.4-201ENST00000362333 112 ntBASIC1.54□□□□□ -2.16
USF1P22415 RNU6-212P-201ENST00000362642 104 ntBASIC1.54□□□□□ -2.16
USF1P22415 Y_RNA.40-201ENST00000362645 93 ntBASIC1.54□□□□□ -2.16
USF1P22415 RNY1P12-201ENST00000364251 105 ntBASIC1.54□□□□□ -2.16
USF1P22415 RNU6-371P-201ENST00000364283 108 ntBASIC1.54□□□□□ -2.16
USF1P22415 MIR29B2-201ENST00000385055 81 ntBASIC1.54□□□□□ -2.16
USF1P22415 RNA5SP465-201ENST00000391195 109 ntBASIC1.54□□□□□ -2.16
USF1P22415 RPS3AP36-201ENST00000398190 775 ntBASIC1.54□□□□□ -2.16
USF1P22415 RAP1BP3-201ENST00000407180 549 ntBASIC1.54□□□□□ -2.16
USF1P22415 RNU2-8P-201ENST00000410727 190 ntBASIC1.54□□□□□ -2.16
USF1P22415 RNA5SP489-201ENST00000410986 109 ntBASIC1.54□□□□□ -2.16
USF1P22415 RNA5SP111-201ENST00000411386 101 ntBASIC1.54□□□□□ -2.16
USF1P22415 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.54□□□□□ -2.16
USF1P22415 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.54□□□□□ -2.16
USF1P22415 AC003989.2-201ENST00000440224 169 ntBASIC1.54□□□□□ -2.16
USF1P22415 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC1.54□□□□□ -2.16
USF1P22415 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.54□□□□□ -2.16
USF1P22415 AL360271.2-201ENST00000447710 161 ntBASIC1.54□□□□□ -2.16
USF1P22415 AL136380.1-201ENST00000447970 162 ntBASIC1.54□□□□□ -2.16
USF1P22415 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.54□□□□□ -2.16
USF1P22415 USP9YP12-201ENST00000450481 570 ntBASIC1.54□□□□□ -2.16
USF1P22415 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.54□□□□□ -2.16
USF1P22415 Y_RNA.672-201ENST00000516289 104 ntBASIC1.54□□□□□ -2.16
USF1P22415 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.54□□□□□ -2.16
USF1P22415 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.54□□□□□ -2.16
USF1P22415 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.54□□□□□ -2.16
USF1P22415 AC022616.8-201ENST00000533569 253 ntBASIC1.54□□□□□ -2.16
USF1P22415 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.54□□□□□ -2.16
USF1P22415 MIR5692A1-201ENST00000580523 69 ntBASIC1.54□□□□□ -2.16
USF1P22415 AC008521.1-201ENST00000587471 187 ntBASIC1.54□□□□□ -2.16
USF1P22415 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.54□□□□□ -2.16
USF1P22415 HMGN1P30-201ENST00000589286 268 ntBASIC1.54□□□□□ -2.16
USF1P22415 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
USF1P22415 AC011458.1-201ENST00000604034 617 ntBASIC1.54□□□□□ -2.16
USF1P22415 AC112191.3-201ENST00000604371 277 ntBASIC1.54□□□□□ -2.16
USF1P22415 AL451064.1-201ENST00000607718 471 ntBASIC1.54□□□□□ -2.16
USF1P22415 AL132822.1-201ENST00000617063 513 ntBASIC1.54□□□□□ -2.16
USF1P22415 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
USF1P22415 MIR378A-201ENST00000362177 66 ntBASIC1.53□□□□□ -2.16
USF1P22415 SNORD115-3-201ENST00000363100 82 ntBASIC1.53□□□□□ -2.16
USF1P22415 RNU6-61P-201ENST00000365528 109 ntBASIC1.53□□□□□ -2.16
USF1P22415 SNORA8-201ENST00000384574 139 ntBASIC1.53□□□□□ -2.16
USF1P22415 RNA5SP212-201ENST00000391223 107 ntBASIC1.53□□□□□ -2.16
USF1P22415 RPL23AP32-201ENST00000395315 459 ntBASIC1.53□□□□□ -2.16
USF1P22415 AL627390.1-201ENST00000396055 340 ntBASIC1.53□□□□□ -2.16
USF1P22415 FGF7P8-201ENST00000402994 292 ntBASIC1.53□□□□□ -2.16
USF1P22415 RNA5SP247-201ENST00000411181 105 ntBASIC1.53□□□□□ -2.16
USF1P22415 RNU6-387P-201ENST00000411331 105 ntBASIC1.53□□□□□ -2.16
USF1P22415 EEF1A1P40-201ENST00000412883 573 ntBASIC1.53□□□□□ -2.16
USF1P22415 BTF3L4P1-201ENST00000413813 468 ntBASIC1.53□□□□□ -2.16
USF1P22415 PGBD4P6-201ENST00000421501 610 ntBASIC1.53□□□□□ -2.16
USF1P22415 MTCYBP5-201ENST00000423752 1135 ntBASIC1.53□□□□□ -2.16
USF1P22415 AL356583.2-201ENST00000426536 280 ntBASIC1.53□□□□□ -2.16
USF1P22415 ISCA1P6-201ENST00000427740 390 ntBASIC1.53□□□□□ -2.16
USF1P22415 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.53□□□□□ -2.16
USF1P22415 HMGB1P31-201ENST00000437242 427 ntBASIC1.53□□□□□ -2.16
USF1P22415 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC1.53□□□□□ -2.16
USF1P22415 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.53□□□□□ -2.16
USF1P22415 PRELID3BP1-201ENST00000457142 540 ntBASIC1.53□□□□□ -2.16
USF1P22415 RBBP4P6-201ENST00000508098 202 ntBASIC1.53□□□□□ -2.16
USF1P22415 SNORA3.4-201ENST00000515969 96 ntBASIC1.53□□□□□ -2.16
USF1P22415 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.53□□□□□ -2.16
USF1P22415 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.16
USF1P22415 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.16
USF1P22415 AC018630.3-201ENST00000542637 96 ntBASIC1.53□□□□□ -2.16
USF1P22415 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
USF1P22415 AC007375.1-201ENST00000554513 578 ntBASIC1.53□□□□□ -2.16
USF1P22415 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms