Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.41□□□□□ -2.18
SHOX2O60902 AC006366.1-201ENST00000422002 759 ntBASIC1.41□□□□□ -2.18
SHOX2O60902 USP9YP18-201ENST00000425912 695 ntBASIC1.41□□□□□ -2.18
SHOX2O60902 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.41□□□□□ -2.18
SHOX2O60902 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC1.41□□□□□ -2.18
SHOX2O60902 AL121601.2-201ENST00000438019 707 ntBASIC1.41□□□□□ -2.18
SHOX2O60902 PTENP1-201ENST00000447117 1215 ntBASIC1.41□□□□□ -2.18
SHOX2O60902 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC1.41□□□□□ -2.18
SHOX2O60902 ZNF736P5Y-201ENST00000451173 805 ntBASIC1.41□□□□□ -2.18
SHOX2O60902 AC093899.1-201ENST00000457984 376 ntBASIC1.41□□□□□ -2.18
SHOX2O60902 HMGN1P7-201ENST00000491722 313 ntBASIC1.41□□□□□ -2.18
SHOX2O60902 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.41□□□□□ -2.18
SHOX2O60902 TPT1P8-201ENST00000510120 555 ntBASIC1.41□□□□□ -2.18
SHOX2O60902 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC1.41□□□□□ -2.18
SHOX2O60902 RNU6-1092P-201ENST00000516955 87 ntBASIC1.41□□□□□ -2.18
SHOX2O60902 AC022616.8-201ENST00000533569 253 ntBASIC1.41□□□□□ -2.18
SHOX2O60902 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC1.41□□□□□ -2.18
SHOX2O60902 CYP2C61P-201ENST00000604072 290 ntBASIC1.41□□□□□ -2.18
SHOX2O60902 uc_338.12-201ENST00000616344 181 ntBASIC1.41□□□□□ -2.18
SHOX2O60902 AL356596.1-201ENST00000624230 379 ntBASIC1.41□□□□□ -2.18
SHOX2O60902 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.41□□□□□ -2.18
SHOX2O60902 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.41□□□□□ -2.18
SHOX2O60902 AC092104.1-201ENST00000497346 1441 ntBASIC1.4□□□□□ -2.18
SHOX2O60902 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.4□□□□□ -2.18
SHOX2O60902 RNY3P13-201ENST00000365542 102 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 AC016831.2-201ENST00000417179 352 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC1.4□□□□□ -2.19
SHOX2O60902 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.4□□□□□ -2.19
SHOX2O60902 MTCO3P5-201ENST00000433620 714 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 MTCO2P20-201ENST00000437339 673 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 RPL23AP35-201ENST00000451906 501 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.4□□□□□ -2.19
SHOX2O60902 AC112492.4-201ENST00000456549 352 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC1.4□□□□□ -2.19
SHOX2O60902 PTP4A1P4-201ENST00000512479 322 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SHOX2O60902 AP003392.2-201ENST00000527269 208 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 AC018630.3-201ENST00000542637 96 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC1.4□□□□□ -2.19
SHOX2O60902 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.4□□□□□ -2.19
SHOX2O60902 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC1.4□□□□□ -2.19
SHOX2O60902 AC092325.1-201ENST00000566449 554 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC1.4□□□□□ -2.19
SHOX2O60902 MIR3146-201ENST00000580367 79 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.4□□□□□ -2.19
SHOX2O60902 RMST_6.1-201ENST00000611980 203 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 AL132822.1-201ENST00000617063 513 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 AC093648.1-201ENST00000623546 606 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 AC090517.3-201ENST00000625170 141 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 UGP2-231ENST00000627474 264 ntTSL 5 BASIC1.4□□□□□ -2.19
SHOX2O60902 AC091812.1-201ENST00000432235 1948 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 AL161722.3-201ENST00000605789 2983 ntBASIC1.4□□□□□ -2.19
SHOX2O60902 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
SHOX2O60902 RNU1-58P-201ENST00000362413 163 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 RNU6-1210P-201ENST00000363775 107 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 RNU6-1274P-201ENST00000384557 107 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 MIR29B2-201ENST00000385055 81 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 CBX3P9-201ENST00000402326 552 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 MIR1262-201ENST00000408276 93 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 UBE2V1P10-201ENST00000414685 269 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 AL365338.1-201ENST00000422282 858 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 AL606517.1-201ENST00000446914 387 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 AC009474.2-201ENST00000451383 136 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC1.39□□□□□ -2.19
SHOX2O60902 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.39□□□□□ -2.19
SHOX2O60902 AC098862.1-201ENST00000504991 413 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.39□□□□□ -2.19
SHOX2O60902 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.39□□□□□ -2.19
SHOX2O60902 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC1.39□□□□□ -2.19
SHOX2O60902 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.39□□□□□ -2.19
SHOX2O60902 AC013828.2-201ENST00000532487 235 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 AC023813.2-201ENST00000564321 469 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 AC144521.1-201ENST00000607148 956 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 ZNF736P9Y-201ENST00000439586 1345 ntBASIC1.39□□□□□ -2.19
SHOX2O60902 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
SHOX2O60902 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.38□□□□□ -2.19
SHOX2O60902 OR4G1P-203ENST00000641984 1631 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 MIR412-201ENST00000362142 91 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 U8.1-201ENST00000362843 134 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 RNU6-511P-201ENST00000363496 107 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 MIR30A-201ENST00000385092 71 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
SHOX2O60902 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 RNU2-36P-201ENST00000410361 191 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC1.38□□□□□ -2.19
SHOX2O60902 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC1.38□□□□□ -2.19
SHOX2O60902 AL627311.1-201ENST00000431514 115 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 MTND3P1-201ENST00000441336 220 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.38□□□□□ -2.19
SHOX2O60902 AC006026.2-201ENST00000457376 180 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 snoU13.14-201ENST00000459372 104 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 FAM206BP-201ENST00000510179 541 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.38□□□□□ -2.19
SHOX2O60902 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.38□□□□□ -2.19
SHOX2O60902 RNU2-10P-201ENST00000516375 211 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 AC023050.2-201ENST00000544968 387 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC1.38□□□□□ -2.19
SHOX2O60902 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.38□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms