Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC005000.2-201ENST00000605468 310 ntBASIC3.64□□□□□ -1.83
CBX4O00257 AP003355.3-201ENST00000623465 114 ntBASIC3.64□□□□□ -1.83
CBX4O00257 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.64□□□□□ -1.83
CBX4O00257 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC3.64□□□□□ -1.83
CBX4O00257 AC073073.2-201ENST00000609827 2578 ntBASIC3.64□□□□□ -1.83
CBX4O00257 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CBX4O00257 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.64□□□□□ -1.83
CBX4O00257 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.64□□□□□ -1.83
CBX4O00257 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CBX4O00257 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CBX4O00257 RNA5SP267-201ENST00000364893 126 ntBASIC3.63□□□□□ -1.83
CBX4O00257 RNU1-140P-201ENST00000365040 165 ntBASIC3.63□□□□□ -1.83
CBX4O00257 RNU6-843P-201ENST00000384454 104 ntBASIC3.63□□□□□ -1.83
CBX4O00257 RNU6-19P-201ENST00000384718 107 ntBASIC3.63□□□□□ -1.83
CBX4O00257 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.63□□□□□ -1.83
CBX4O00257 AC023141.4-201ENST00000412031 328 ntBASIC3.63□□□□□ -1.83
CBX4O00257 EIF1AXP1-201ENST00000419267 435 ntBASIC3.63□□□□□ -1.83
CBX4O00257 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CBX4O00257 PTGES3P4-201ENST00000426243 356 ntBASIC3.63□□□□□ -1.83
CBX4O00257 AC092423.1-201ENST00000430165 186 ntBASIC3.63□□□□□ -1.83
CBX4O00257 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.63□□□□□ -1.83
CBX4O00257 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.63□□□□□ -1.83
CBX4O00257 AL031183.1-201ENST00000457667 207 ntBASIC3.63□□□□□ -1.83
CBX4O00257 AL441985.1-201ENST00000457727 251 ntBASIC3.63□□□□□ -1.83
CBX4O00257 SNORA59A-201ENST00000459326 152 ntBASIC3.63□□□□□ -1.83
CBX4O00257 RN7SL93P-201ENST00000463035 293 ntBASIC3.63□□□□□ -1.83
CBX4O00257 AC107626.1-201ENST00000471084 183 ntBASIC3.63□□□□□ -1.83
CBX4O00257 RPS26P21-201ENST00000475397 348 ntBASIC3.63□□□□□ -1.83
CBX4O00257 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.63□□□□□ -1.83
CBX4O00257 SNORA31.21-201ENST00000517180 77 ntBASIC3.63□□□□□ -1.83
CBX4O00257 AC144568.1-201ENST00000520139 137 ntBASIC3.63□□□□□ -1.83
CBX4O00257 DNAJC8P1-201ENST00000554535 372 ntBASIC3.63□□□□□ -1.83
CBX4O00257 HSBP1P1-201ENST00000555205 166 ntBASIC3.63□□□□□ -1.83
CBX4O00257 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.63□□□□□ -1.83
CBX4O00257 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.63□□□□□ -1.83
CBX4O00257 MIR5701-3-201ENST00000578890 82 ntBASIC3.63□□□□□ -1.83
CBX4O00257 MIR5701-1-201ENST00000585138 82 ntBASIC3.63□□□□□ -1.83
CBX4O00257 MIR7851-201ENST00000610611 160 ntBASIC3.63□□□□□ -1.83
CBX4O00257 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.63□□□□□ -1.83
CBX4O00257 MIR5701-2-201ENST00000615634 82 ntBASIC3.63□□□□□ -1.83
CBX4O00257 MIR8058-201ENST00000615737 89 ntBASIC3.63□□□□□ -1.83
CBX4O00257 AL606534.2-204ENST00000635008 178 ntBASIC3.63□□□□□ -1.83
CBX4O00257 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
CBX4O00257 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.63□□□□□ -1.83
CBX4O00257 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CBX4O00257 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
CBX4O00257 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.62□□□□□ -1.83
CBX4O00257 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CBX4O00257 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
CBX4O00257 RNU1-18P-201ENST00000363062 164 ntBASIC3.62□□□□□ -1.83
CBX4O00257 RNA5SP50-201ENST00000363731 107 ntBASIC3.62□□□□□ -1.83
CBX4O00257 SNORA48.2-201ENST00000390926 124 ntBASIC3.62□□□□□ -1.83
CBX4O00257 MTCYBP2-201ENST00000407745 171 ntBASIC3.62□□□□□ -1.83
CBX4O00257 RNU6-985P-201ENST00000410182 104 ntBASIC3.62□□□□□ -1.83
CBX4O00257 Y_RNA.605-201ENST00000410577 105 ntBASIC3.62□□□□□ -1.83
CBX4O00257 RNU2-49P-201ENST00000410666 184 ntBASIC3.62□□□□□ -1.83
CBX4O00257 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.62□□□□□ -1.83
CBX4O00257 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.62□□□□□ -1.83
CBX4O00257 AC007969.2-201ENST00000441891 191 ntBASIC3.62□□□□□ -1.83
CBX4O00257 AL513124.1-201ENST00000450410 614 ntBASIC3.62□□□□□ -1.83
CBX4O00257 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.62□□□□□ -1.83
CBX4O00257 U3.44-201ENST00000458938 192 ntBASIC3.62□□□□□ -1.83
CBX4O00257 RPL23AP62-201ENST00000463396 453 ntBASIC3.62□□□□□ -1.83
CBX4O00257 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.62□□□□□ -1.83
CBX4O00257 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.62□□□□□ -1.83
CBX4O00257 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.62□□□□□ -1.83
CBX4O00257 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.62□□□□□ -1.83
CBX4O00257 RNU6-764P-201ENST00000516396 105 ntBASIC3.62□□□□□ -1.83
CBX4O00257 SNORA31.23-201ENST00000517219 133 ntBASIC3.62□□□□□ -1.83
CBX4O00257 RN7SKP57-201ENST00000517248 293 ntBASIC3.62□□□□□ -1.83
CBX4O00257 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CBX4O00257 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.62□□□□□ -1.83
CBX4O00257 U7.8-201ENST00000619968 63 ntBASIC3.62□□□□□ -1.83
CBX4O00257 AL162373.1-201ENST00000620433 407 ntBASIC3.62□□□□□ -1.83
CBX4O00257 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.62□□□□□ -1.83
CBX4O00257 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.62□□□□□ -1.83
CBX4O00257 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CBX4O00257 TNPO1P3-201ENST00000436471 2662 ntBASIC3.62□□□□□ -1.83
CBX4O00257 AC233981.2-201ENST00000611524 1614 ntBASIC3.62□□□□□ -1.83
CBX4O00257 AC008669.1-201ENST00000565823 2178 ntBASIC3.62□□□□□ -1.83
CBX4O00257 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CBX4O00257 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CBX4O00257 AP001486.2-201ENST00000561652 5113 ntBASIC3.61□□□□□ -1.83
CBX4O00257 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CBX4O00257 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CBX4O00257 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CBX4O00257 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CBX4O00257 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CBX4O00257 RNU6-487P-201ENST00000365430 104 ntBASIC3.61□□□□□ -1.83
CBX4O00257 RNU6-968P-201ENST00000384076 107 ntBASIC3.61□□□□□ -1.83
CBX4O00257 MIR544A-201ENST00000384855 91 ntBASIC3.61□□□□□ -1.83
CBX4O00257 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.61□□□□□ -1.83
CBX4O00257 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.61□□□□□ -1.83
CBX4O00257 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.61□□□□□ -1.83
CBX4O00257 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.61□□□□□ -1.83
CBX4O00257 RNU4-77P-201ENST00000516692 156 ntBASIC3.61□□□□□ -1.83
CBX4O00257 RNU6-579P-201ENST00000516879 102 ntBASIC3.61□□□□□ -1.83
CBX4O00257 RNU6-1137P-201ENST00000517073 99 ntBASIC3.61□□□□□ -1.83
CBX4O00257 Y_RNA.721-201ENST00000517207 102 ntBASIC3.61□□□□□ -1.83
CBX4O00257 RNU6-711P-201ENST00000517255 106 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms