Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 Y_RNA.124-201ENST00000363339 93 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-353P-201ENST00000364266 108 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-343P-201ENST00000364709 104 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-110P-201ENST00000384508 104 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 RPS3AP1-201ENST00000413190 320 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 EBAG9P1-201ENST00000418955 543 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 CETN4P-201ENST00000432407 469 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AC002429.1-201ENST00000437672 148 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AC092427.1-201ENST00000439177 601 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AL078601.1-201ENST00000444542 271 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AL353752.1-201ENST00000454946 260 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 snoU13.14-201ENST00000459372 104 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AC010631.1-201ENST00000474150 156 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AC097473.1-201ENST00000508142 408 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AC108729.3-201ENST00000513484 108 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 SNORA31.3-201ENST00000516029 96 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU5A-4P-201ENST00000516588 111 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-1261P-201ENST00000517194 104 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AC137800.2-201ENST00000574375 120 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AC126365.2-201ENST00000580630 379 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 AC123767.1-202ENST00000620407 817 ntBASIC0.25□□□□□ -2.37
TRAV1-2A0A0B4J238 ELL2P3-201ENST00000457883 1602 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-843P-201ENST00000384454 104 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-114P-201ENST00000384704 105 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 MIR29B2-201ENST00000385055 81 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AC098934.3-201ENST00000430450 190 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 MTCYBP15-201ENST00000433123 1127 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 BTF3P15-201ENST00000455606 336 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 MTND1P16-201ENST00000465177 898 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 MED28P2-201ENST00000475771 317 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AC098869.1-201ENST00000481627 292 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AC104629.1-201ENST00000494226 508 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 LAMTOR3P2-201ENST00000504479 232 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AC093809.1-201ENST00000509155 340 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-390P-201ENST00000516259 103 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 RNA5SP121-201ENST00000516537 101 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AC087897.1-201ENST00000550134 156 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 HMGB1P33-201ENST00000563485 527 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 MIR4524B-201ENST00000581569 115 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 VN1R83P-201ENST00000595685 445 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AC090578.1-201ENST00000604955 591 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 AL357080.1-201ENST00000617394 239 ntBASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.24□□□□□ -2.37
TRAV1-2A0A0B4J238 U3.8-201ENST00000363675 217 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-288P-201ENST00000363690 104 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-1210P-201ENST00000363775 107 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 SNORA63D-201ENST00000364359 132 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 Y_RNA.332-201ENST00000365271 113 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6-432P-201ENST00000384196 109 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 MIR200A-201ENST00000384875 90 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 ZNF736P10Y-201ENST00000403990 1110 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 Y_RNA.595-201ENST00000410403 105 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 VN1R42P-201ENST00000424651 344 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 SNRPFP3-201ENST00000457792 225 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AC002350.1-201ENST00000490759 375 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AL590705.4-201ENST00000532209 134 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 ZKSCAN7P1-201ENST00000543668 673 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 MTATP6P3-201ENST00000581686 676 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 BNIP3P31-201ENST00000604515 566 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AC105148.1-201ENST00000604961 409 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AC104465.1-201ENST00000611365 139 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AL445264.1-201ENST00000621719 171 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AC099654.9-201ENST00000637055 678 ntBASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.23□□□□□ -2.37
TRAV1-2A0A0B4J238 AL442644.1-201ENST00000454390 3105 ntBASIC0.22□□□□□ -2.37
TRAV1-2A0A0B4J238 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms