Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 MIR3945-201ENST00000581853 98 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 HMGB1P50-201ENST00000605814 607 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 AC093732.2-201ENST00000607950 274 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 AC007792.1-201ENST00000623023 402 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 OFD1P6Y-202ENST00000451061 2724 ntBASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC9Q9Y3X0 SNORD62.1-201ENST00000362541 86 ntBASIC4.54□□□□□ -1.68
CCDC9Q9Y3X0 Y_RNA.70-201ENST00000362886 110 ntBASIC4.54□□□□□ -1.68
CCDC9Q9Y3X0 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC9Q9Y3X0 AC243964.1-201ENST00000441814 261 ntBASIC4.54□□□□□ -1.68
CCDC9Q9Y3X0 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC9Q9Y3X0 AC009812.2-201ENST00000517657 457 ntBASIC4.54□□□□□ -1.68
CCDC9Q9Y3X0 AC006557.5-201ENST00000603126 811 ntBASIC4.54□□□□□ -1.68
CCDC9Q9Y3X0 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC9Q9Y3X0 AC138915.1-201ENST00000565427 1685 ntBASIC4.54□□□□□ -1.68
CCDC9Q9Y3X0 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
CCDC9Q9Y3X0 AC002543.1-201ENST00000299783 1954 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 AC010329.5-201ENST00000623497 2174 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 RNU6-486P-201ENST00000363116 107 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 RNU5E-4P-201ENST00000364931 120 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 AL391417.1-201ENST00000404100 426 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 AL139095.1-201ENST00000404326 391 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 MIR548K-201ENST00000408406 116 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 RNU6-1140P-201ENST00000410517 106 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 RPL30P12-201ENST00000474666 353 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 AC069499.1-201ENST00000489433 509 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 MTND5P5-201ENST00000503764 376 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 Y_RNA.691-201ENST00000516611 103 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 COX6CP5-201ENST00000527162 228 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 AC009994.1-201ENST00000606889 253 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 AL591516.1-201ENST00000611326 274 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 Z75746.1-201ENST00000440243 2080 ntBASIC4.53□□□□□ -1.68
CCDC9Q9Y3X0 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 RNU6-1010P-201ENST00000362757 107 ntBASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 Y_RNA.151-201ENST00000363566 112 ntBASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 RNU6-692P-201ENST00000384496 107 ntBASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 AC017079.2-201ENST00000416102 485 ntBASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 RPS3AP52-201ENST00000435639 297 ntBASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 RN7SKP24-201ENST00000515888 284 ntBASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 AC079598.5-201ENST00000547460 117 ntBASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 AC124303.1-201ENST00000605703 360 ntBASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 AC019193.3-201ENST00000609144 554 ntBASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 MIR6128-201ENST00000615528 109 ntBASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 USP33-201ENST00000357428 4155 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
CCDC9Q9Y3X0 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 RNA5SP197-201ENST00000363357 119 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 RNU6-1222P-201ENST00000384615 107 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 MIR517A-201ENST00000385001 87 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 AL513475.1-201ENST00000406602 315 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 RN7SKP220-201ENST00000410611 288 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 RPL37P10-201ENST00000412884 288 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 AC097463.2-201ENST00000421074 142 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 RPL39P29-201ENST00000447779 157 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 SNRPGP7-201ENST00000469016 106 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 AC109925.1-201ENST00000478069 331 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 SNORA25.11-201ENST00000515935 105 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 AC105029.1-201ENST00000520250 669 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 AP002404.1-201ENST00000532005 451 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 KLKP1-201ENST00000595979 403 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 AC073410.2-201ENST00000603240 332 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 AC018889.1-201ENST00000605372 397 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 AL133215.3-201ENST00000609801 448 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 AL161423.1-201ENST00000613700 262 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 MIR7157-201ENST00000635801 60 ntBASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CCDC9Q9Y3X0 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 RNU6-212P-201ENST00000362642 104 ntBASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 MIR521-1-201ENST00000384902 87 ntBASIC4.5□□□□□ -1.69
CCDC9Q9Y3X0 BTF3L4P2-201ENST00000392798 346 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 91.1 ms