Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MIR186-201ENST00000384988 86 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 MTCO3P40-201ENST00000392516 676 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RPL7P54-201ENST00000438336 674 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.7□□□□□ -1.98
VPS28Q9UK41 MTCO2P7-201ENST00000446518 666 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 CYP2C59P-201ENST00000457790 269 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU7-167P-201ENST00000459160 62 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 SRRM1P2-201ENST00000464531 1192 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 AF213884.2-201ENST00000510417 903 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 SNORA25.17-201ENST00000517184 124 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 CKS1BP7-201ENST00000522230 235 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS28Q9UK41 AC104383.1-201ENST00000530297 370 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.7□□□□□ -1.98
VPS28Q9UK41 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.7□□□□□ -1.98
VPS28Q9UK41 AC103987.3-201ENST00000582071 292 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 MIR4672-201ENST00000583126 81 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-6P-201ENST00000606623 107 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 AC002044.1-201ENST00000606707 158 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 AC009233.1-201ENST00000616477 371 ntBASIC2.7□□□□□ -1.98
VPS28Q9UK41 RNU6-527P-201ENST00000363425 104 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 RNU6-1085P-201ENST00000363576 107 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 RNU6-266P-201ENST00000364225 107 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 SNORD37.1-201ENST00000390968 65 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 RNU2-23P-201ENST00000410545 195 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 AL591043.1-201ENST00000432461 424 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
VPS28Q9UK41 AC090515.1-201ENST00000465295 476 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 RPL23AP45-201ENST00000476406 468 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS28Q9UK41 TBCAP3-201ENST00000512475 312 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 AC069113.1-201ENST00000517763 267 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 AC109479.2-201ENST00000517842 174 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 AP005902.1-201ENST00000521358 186 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 AL356575.1-201ENST00000603008 283 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 AC007621.1-201ENST00000604544 437 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.69□□□□□ -1.98
VPS28Q9UK41 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 AL359880.1-201ENST00000621879 266 ntBASIC2.69□□□□□ -1.98
VPS28Q9UK41 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.69□□□□□ -1.98
VPS28Q9UK41 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.69□□□□□ -1.98
VPS28Q9UK41 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.69□□□□□ -1.98
VPS28Q9UK41 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.69□□□□□ -1.98
VPS28Q9UK41 SNORD62.1-201ENST00000362541 86 ntBASIC2.68□□□□□ -1.98
VPS28Q9UK41 RNU6-623P-201ENST00000363143 105 ntBASIC2.68□□□□□ -1.98
VPS28Q9UK41 AL096701.2-201ENST00000416920 238 ntBASIC2.68□□□□□ -1.98
VPS28Q9UK41 TIMM9P3-201ENST00000428659 274 ntBASIC2.68□□□□□ -1.98
VPS28Q9UK41 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.68□□□□□ -1.98
VPS28Q9UK41 MTND1P1-201ENST00000445453 368 ntBASIC2.68□□□□□ -1.98
VPS28Q9UK41 PSPHP1-201ENST00000450062 261 ntBASIC2.68□□□□□ -1.98
VPS28Q9UK41 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS28Q9UK41 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.68□□□□□ -1.98
VPS28Q9UK41 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS28Q9UK41 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS28Q9UK41 RPL37P25-201ENST00000507308 276 ntBASIC2.68□□□□□ -1.98
VPS28Q9UK41 RNU2-53P-201ENST00000516257 147 ntBASIC2.68□□□□□ -1.98
VPS28Q9UK41 AP000889.1-201ENST00000530968 660 ntBASIC2.68□□□□□ -1.98
VPS28Q9UK41 AC022880.1-201ENST00000534017 973 ntBASIC2.68□□□□□ -1.98
VPS28Q9UK41 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS28Q9UK41 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS28Q9UK41 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.68□□□□□ -1.98
VPS28Q9UK41 U4atac.1-201ENST00000618345 95 ntBASIC2.68□□□□□ -1.98
VPS28Q9UK41 AC068792.1-201ENST00000621354 417 ntBASIC2.68□□□□□ -1.98
VPS28Q9UK41 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.68□□□□□ -1.98
VPS28Q9UK41 AC002543.1-201ENST00000299783 1954 ntBASIC2.68□□□□□ -1.98
VPS28Q9UK41 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
VPS28Q9UK41 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
VPS28Q9UK41 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
VPS28Q9UK41 MIR6073-201ENST00000352083 89 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 RNU4-75P-201ENST00000364621 146 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS28Q9UK41 Y_RNA.517-201ENST00000384551 106 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 AL139095.1-201ENST00000404326 391 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 MTCO3P41-201ENST00000414801 328 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 RPLP0P7-201ENST00000416050 667 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 AC008267.5-201ENST00000424928 265 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 VN1R108P-201ENST00000431580 830 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS28Q9UK41 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS28Q9UK41 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.67□□□□□ -1.98
VPS28Q9UK41 RNU6-377P-201ENST00000515965 102 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 RNA5SP282-201ENST00000516355 108 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.67□□□□□ -1.98
VPS28Q9UK41 CBX3P7-201ENST00000532876 502 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS28Q9UK41 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.67□□□□□ -1.98
VPS28Q9UK41 AC060766.3-201ENST00000591442 263 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 RPL30P11-203ENST00000598995 310 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 AL713866.2-201ENST00000603579 219 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 AC123912.5-201ENST00000605470 343 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 AC007792.1-201ENST00000623023 402 ntBASIC2.67□□□□□ -1.98
VPS28Q9UK41 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
VPS28Q9UK41 RNU6-212P-201ENST00000362642 104 ntBASIC2.66□□□□□ -1.98
VPS28Q9UK41 RNU6-105P-201ENST00000363909 104 ntBASIC2.66□□□□□ -1.98
VPS28Q9UK41 SNORD56-201ENST00000413522 71 ntBASIC2.66□□□□□ -1.98
VPS28Q9UK41 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
VPS28Q9UK41 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS28Q9UK41 SUMO1P4-201ENST00000429430 302 ntBASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms