Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 RPL35AP21-201ENST00000437667 333 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 SNORA84-201ENST00000459229 133 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 RPS17P2-201ENST00000461663 408 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 RN7SL303P-201ENST00000469773 251 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 S100A11P1-201ENST00000477525 312 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 AC103975.1-201ENST00000482506 483 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 RNU5F-2P-201ENST00000516066 82 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 RNU6-513P-201ENST00000516104 104 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 RNU6-436P-201ENST00000516171 114 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 IGLVIV-65-201ENST00000517313 360 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 CARD18-203ENST00000532895 422 ntTSL 2 BASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 AP002001.1-203ENST00000534002 267 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 AC093591.2-201ENST00000565254 3843 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 MIR3936-201ENST00000584304 110 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 AL034555.1-201ENST00000604816 211 ntBASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
LIMD1Q9UGP4 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 Y_RNA.629-201ENST00000411368 105 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 CR769767.1-201ENST00000436337 346 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 AL353748.1-201ENST00000440753 474 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 RPL21P126-201ENST00000470049 478 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 AC108022.1-201ENST00000493466 478 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 AC015795.1-201ENST00000513669 327 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 RNU1-61P-201ENST00000516107 151 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 SNORD116-25-201ENST00000516517 92 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 RNU6-344P-201ENST00000516635 111 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 RNU6-107P-201ENST00000516643 102 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 MIR2116-201ENST00000517221 80 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 AC136628.3-201ENST00000521868 290 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 SNORD11B-201ENST00000607707 90 ntBASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
LIMD1Q9UGP4 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 ZNF137P-201ENST00000456718 1920 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 RNU6-151P-201ENST00000364158 107 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 SNORA71.2-201ENST00000364941 134 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 RNU6-19P-201ENST00000384718 107 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 RNU6-376P-201ENST00000384731 106 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 RNU6-763P-201ENST00000390865 106 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 AL356387.2-201ENST00000422272 243 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 EIF4HP2-201ENST00000424380 563 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 AC008267.6-201ENST00000441664 139 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 RNA5SP103-201ENST00000459503 118 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 AC010409.1-201ENST00000487382 476 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 RN7SL558P-201ENST00000497468 299 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 AC011471.1-201ENST00000585766 187 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 AC024220.1-201ENST00000603675 484 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 AC091979.2-201ENST00000607514 214 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 AC004825.2-201ENST00000616634 455 ntBASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LIMD1Q9UGP4 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 OR14L1P-202ENST00000641545 3009 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 SNORA22C-201ENST00000384614 134 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 MIR549A-201ENST00000385268 96 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 RNU6-381P-201ENST00000391259 108 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 AL357075.1-201ENST00000404107 726 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 U3.32-201ENST00000408116 212 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 RPS12P10-201ENST00000427031 377 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 RPL23AP82-202ENST00000427528 469 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 RPS29P17-201ENST00000430795 166 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 RNA5SP310-201ENST00000459084 116 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms