Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 SUB1P4-201ENST00000566062 339 ntBASIC1.32□□□□□ -2.2
VCX3AQ9NNX9 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.32□□□□□ -2.2
VCX3AQ9NNX9 AC092106.3-201ENST00000611308 722 ntBASIC1.32□□□□□ -2.2
VCX3AQ9NNX9 AC087241.4-201ENST00000612441 480 ntBASIC1.32□□□□□ -2.2
VCX3AQ9NNX9 AC012409.4-201ENST00000612923 249 ntBASIC1.32□□□□□ -2.2
VCX3AQ9NNX9 AC022513.1-201ENST00000624512 117 ntBASIC1.32□□□□□ -2.2
VCX3AQ9NNX9 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 RNU6-83P-201ENST00000384568 112 ntBASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 MIR122-201ENST00000385044 85 ntBASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 AL831737.1-201ENST00000441288 271 ntBASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 AP000797.1-201ENST00000478870 387 ntBASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 RNU1-86P-201ENST00000516108 154 ntBASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 RNU1-107P-201ENST00000516617 154 ntBASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 RNA5SP337-201ENST00000517007 109 ntBASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 ADI1P3-201ENST00000549509 470 ntBASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 AC022022.2-201ENST00000602989 360 ntBASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 AC130454.1-201ENST00000622948 401 ntBASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 AP001002.2-201ENST00000625137 386 ntBASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 AC008993.2-201ENST00000631744 806 ntBASIC1.31□□□□□ -2.2
VCX3AQ9NNX9 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 AC073343.1-201ENST00000328239 651 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 Y_RNA.67-201ENST00000362870 100 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 SNORD56.2-201ENST00000363242 71 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 RNA5SP387-201ENST00000364226 106 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 AL669831.1-202ENST00000428504 417 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 RPL22P17-201ENST00000438729 315 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 AC007969.2-201ENST00000441891 191 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 AL360271.2-201ENST00000447710 161 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 RPL39P29-201ENST00000447779 157 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 AMD1P1-201ENST00000457220 922 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 AC130509.1-201ENST00000464158 433 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 AC104564.1-201ENST00000493028 407 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 AC108078.2-201ENST00000510750 236 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 MIR449C-201ENST00000516047 92 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 EIF4BP1-201ENST00000554881 351 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 AC002400.1-201ENST00000569310 726 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 AL353778.1-201ENST00000603149 408 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 AL136363.2-201ENST00000604173 851 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 RMST_7.1-201ENST00000621935 268 ntBASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC1.3□□□□□ -2.2
VCX3AQ9NNX9 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 RNU6-660P-201ENST00000364566 109 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 RNU6-39P-201ENST00000384344 107 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 MIR583-201ENST00000384846 75 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 MIR491-201ENST00000384877 84 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 RPL30P13-201ENST00000418873 348 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 MTND1P32-201ENST00000433043 938 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 SNRPGP13-201ENST00000442212 177 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 DUXAP8-207ENST00000456786 622 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AC006026.2-201ENST00000457376 180 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AC091951.3-201ENST00000504093 246 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AC025465.3-201ENST00000510570 311 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AK6P1-201ENST00000540219 478 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 SUB1P3-201ENST00000564581 315 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AP001004.1-201ENST00000582468 324 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AC091135.1-201ENST00000585943 307 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AC131159.1-201ENST00000621854 213 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AC120349.3-201ENST00000624377 529 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 AC110994.2-201ENST00000635481 492 ntBASIC1.29□□□□□ -2.2
VCX3AQ9NNX9 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 ZNF29P-201ENST00000225587 168 ntBASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 RNU6-271P-201ENST00000363858 105 ntBASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 RNU1-78P-201ENST00000391248 165 ntBASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 CALM2P2-201ENST00000428512 440 ntBASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 USP9YP17-201ENST00000444617 696 ntBASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 snoU13.9-201ENST00000458927 103 ntBASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 MTND2P33-201ENST00000506452 1031 ntBASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 MIR4509-3-201ENST00000578671 94 ntBASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 MIR3162-201ENST00000581818 82 ntBASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 MIR4509-2-201ENST00000583920 94 ntBASIC1.28□□□□□ -2.2
VCX3AQ9NNX9 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms