Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MICF-203ENST00000432679 129 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 MRPL50P4-201ENST00000446432 475 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 MTND3P16-201ENST00000452205 344 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 RPS29P25-201ENST00000481709 171 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 RNA5SP320-201ENST00000516263 124 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 RNU5B-3P-201ENST00000516601 115 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 Y_RNA.704-201ENST00000516851 102 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 AP000787.2-201ENST00000604432 568 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 AC138627.2-201ENST00000624202 601 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 AC004520.1-201ENST00000608362 1413 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 AC027514.1-201ENST00000588561 1603 ntBASIC2.5□□□□□ -2.01
CCDC3Q9BQI4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 RNU4-12P-201ENST00000365233 139 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 RNU6-487P-201ENST00000365430 104 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 SET-203ENST00000372688 801 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 RNU6-19P-201ENST00000384718 107 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 MIR27B-201ENST00000385129 97 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 AC016831.2-201ENST00000417179 352 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 AL121890.1-201ENST00000435457 205 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 AL121769.1-201ENST00000469473 401 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 Y_RNA.654-201ENST00000497848 106 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 AIG1P1-201ENST00000503376 148 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 ANXA2P1-201ENST00000505539 926 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 AC008549.1-201ENST00000512900 643 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 RN7SKP24-201ENST00000515888 284 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 RNU5F-8P-201ENST00000515941 111 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 RNU1-41P-201ENST00000516161 162 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 RNU1-48P-201ENST00000516400 162 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 ACA59.2-201ENST00000517061 156 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 AC109329.2-201ENST00000519658 482 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 AC243972.3-201ENST00000539655 198 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 GLYCAM1-201ENST00000546596 285 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 BNIP3P6-201ENST00000549284 499 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 U6atac.1-201ENST00000616025 117 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 U4.3-201ENST00000621047 82 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 MTND4P5-201ENST00000435821 1374 ntBASIC2.49□□□□□ -2.01
CCDC3Q9BQI4 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 Y_RNA.89-201ENST00000363031 102 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 Y_RNA.231-201ENST00000364358 102 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 RNU4-20P-201ENST00000365601 151 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 RNU6-1083P-201ENST00000384022 107 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AL590004.2-201ENST00000404787 371 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 MIR1277-201ENST00000408536 78 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 RNU6-1068P-201ENST00000410958 103 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 RNU2-25P-201ENST00000411041 191 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 RNU6-373P-201ENST00000411247 98 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 HMGN2P35-201ENST00000412164 270 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 TOMM20P4-201ENST00000427861 435 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AC011816.1-201ENST00000441346 546 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AC092001.1-201ENST00000453012 261 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 RNU6-1208P-201ENST00000459588 107 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 DYNLL1P5-201ENST00000467158 270 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AC103975.1-201ENST00000482506 483 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 RPL23AP70-201ENST00000483361 460 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 YWHAEP4-201ENST00000505390 198 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AC069113.1-201ENST00000517763 267 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 COPS8P3-201ENST00000526024 482 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AC090616.3-201ENST00000582184 217 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AC023043.3-201ENST00000593113 385 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 RNU6-89P-201ENST00000606519 100 ntBASIC2.48□□□□□ -2.01
CCDC3Q9BQI4 AC069234.5-201ENST00000611056 416 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 155.8 ms