Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.76□□□□□ -2.29
USP54Q70EL1 RNU6-481P-201ENST00000384194 107 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 Y_RNA.458-201ENST00000384240 102 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 RNU6-883P-201ENST00000384597 107 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 RNU6-114P-201ENST00000384704 105 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 RNA5SP100-201ENST00000410903 110 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 RNA5SP59-201ENST00000410922 110 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC0.76□□□□□ -2.29
USP54Q70EL1 AC245047.4-201ENST00000433189 144 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC0.76□□□□□ -2.29
USP54Q70EL1 OARD1-209ENST00000471367 401 ntTSL 2 BASIC0.76□□□□□ -2.29
USP54Q70EL1 HESX1-202ENST00000473921 757 ntTSL 5 BASIC0.76□□□□□ -2.29
USP54Q70EL1 RPL30P7-201ENST00000479312 323 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 RNU6-390P-201ENST00000516259 103 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 RN7SKP258-201ENST00000517151 304 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 RNU6-667P-201ENST00000517186 102 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 AP003355.1-201ENST00000518956 587 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 AC022616.8-201ENST00000533569 253 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 OR6C7P-201ENST00000547875 934 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC0.76□□□□□ -2.29
USP54Q70EL1 AL355598.1-201ENST00000604169 202 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 MIR8065-201ENST00000620577 100 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.76□□□□□ -2.29
USP54Q70EL1 HSBP1P2-201ENST00000299671 229 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 RNU6-288P-201ENST00000363690 104 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 RNU6-414P-201ENST00000363705 104 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 SNORD14D-201ENST00000384390 87 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
USP54Q70EL1 RPL37P10-201ENST00000412884 288 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC0.75□□□□□ -2.29
USP54Q70EL1 RNU6-143P-201ENST00000516942 93 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 RNU6-1183P-201ENST00000517054 60 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 ACA59.2-201ENST00000517061 156 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.75□□□□□ -2.29
USP54Q70EL1 AC002400.1-201ENST00000569310 726 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 KATNBL1P5-201ENST00000605015 517 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 AC253576.2-201ENST00000618815 580 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 SNORD33-201ENST00000362761 85 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 RNU6-1207P-201ENST00000384343 107 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 RNU4-27P-201ENST00000410889 139 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC0.75□□□□□ -2.29
USP54Q70EL1 RPL36AP53-201ENST00000432891 316 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 AC010409.1-201ENST00000487382 476 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC0.75□□□□□ -2.29
USP54Q70EL1 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC0.75□□□□□ -2.29
USP54Q70EL1 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.75□□□□□ -2.29
USP54Q70EL1 HMGN1P13-201ENST00000505795 138 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 SNORA31.17-201ENST00000516953 127 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 AP001189.2-201ENST00000527320 189 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 AP003122.4-201ENST00000530980 758 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 AC138915.2-201ENST00000569776 97 ntBASIC0.75□□□□□ -2.29
USP54Q70EL1 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
USP54Q70EL1 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
USP54Q70EL1 AC083799.1-201ENST00000366451 910 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 MIR1267-201ENST00000408723 78 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 AC138623.1-201ENST00000418060 216 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 GXYLT1P1-201ENST00000446657 490 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 AC020550.1-201ENST00000447385 163 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 OR6C5P-201ENST00000452388 923 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 AC092001.1-201ENST00000453012 261 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 AC093809.1-201ENST00000509155 340 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 RNU6-714P-201ENST00000516963 103 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.74□□□□□ -2.29
USP54Q70EL1 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC0.74□□□□□ -2.29
USP54Q70EL1 AF038458.1-201ENST00000588406 262 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 AC090330.1-201ENST00000588646 764 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 VN1R83P-201ENST00000595685 445 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 CLIC4P2-201ENST00000601934 717 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 AC107952.2-201ENST00000606048 486 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC0.74□□□□□ -2.29
USP54Q70EL1 U6.99-201ENST00000637524 83 ntBASIC0.74□□□□□ -2.29
USP54Q70EL1 U6.112-201ENST00000384129 70 ntBASIC0.73□□□□□ -2.29
USP54Q70EL1 RNU2-42P-201ENST00000410697 113 ntBASIC0.73□□□□□ -2.29
USP54Q70EL1 DEFB130D-201ENST00000426866 237 ntBASIC0.73□□□□□ -2.29
USP54Q70EL1 OFD1P7Y-201ENST00000454643 1155 ntBASIC0.73□□□□□ -2.29
USP54Q70EL1 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC0.73□□□□□ -2.29
USP54Q70EL1 AC025465.3-201ENST00000510570 311 ntBASIC0.73□□□□□ -2.29
USP54Q70EL1 RNU11-2P-201ENST00000516898 142 ntBASIC0.73□□□□□ -2.29
USP54Q70EL1 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC0.73□□□□□ -2.29
USP54Q70EL1 AC098614.4-201ENST00000607601 462 ntBASIC0.73□□□□□ -2.29
USP54Q70EL1 AC067863.3-201ENST00000624172 122 ntBASIC0.73□□□□□ -2.29
USP54Q70EL1 AC231657.1-201ENST00000624313 397 ntBASIC0.73□□□□□ -2.29
USP54Q70EL1 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.73□□□□□ -2.29
USP54Q70EL1 AC073544.1-201ENST00000600110 1595 ntBASIC0.73□□□□□ -2.29
USP54Q70EL1 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.72□□□□□ -2.29
USP54Q70EL1 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
USP54Q70EL1 AL133475.1-201ENST00000404414 305 ntBASIC0.72□□□□□ -2.29
USP54Q70EL1 MTCO3P45-201ENST00000443036 613 ntBASIC0.72□□□□□ -2.29
USP54Q70EL1 MTATP6P30-201ENST00000443540 664 ntBASIC0.72□□□□□ -2.29
USP54Q70EL1 USP9YP17-201ENST00000444617 696 ntBASIC0.72□□□□□ -2.29
USP54Q70EL1 AC079776.3-201ENST00000450665 370 ntBASIC0.72□□□□□ -2.29
USP54Q70EL1 RNU6-333P-201ENST00000459117 107 ntBASIC0.72□□□□□ -2.29
USP54Q70EL1 RPS26P55-201ENST00000471178 356 ntBASIC0.72□□□□□ -2.29
USP54Q70EL1 COPS8P3-201ENST00000526024 482 ntBASIC0.72□□□□□ -2.29
USP54Q70EL1 AC004817.2-201ENST00000561794 651 ntBASIC0.72□□□□□ -2.29
USP54Q70EL1 MIR4789-201ENST00000577469 82 ntBASIC0.72□□□□□ -2.29
USP54Q70EL1 AC023932.2-201ENST00000603176 175 ntBASIC0.72□□□□□ -2.29
USP54Q70EL1 AC100814.1-201ENST00000606963 623 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms