Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 uc_338.1-201ENST00000612113 180 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.784-201ENST00000613803 101 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 MIR7112-201ENST00000616126 65 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.787-201ENST00000616522 101 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.780-201ENST00000617336 101 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 Y_RNA.801-201ENST00000619005 101 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 MTND5P19-201ENST00000424872 1794 ntBASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
PTCHD3Q3KNS1 RNU1-70P-201ENST00000362618 164 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 SNORA38.1-201ENST00000364172 131 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-790P-201ENST00000384479 105 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 SNORA75.6-201ENST00000391318 127 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 AL590004.1-201ENST00000405321 300 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-1304P-201ENST00000411374 106 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 FTH1P25-201ENST00000447665 469 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 Y_RNA.631-201ENST00000459607 101 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 RN7SL807P-201ENST00000470923 297 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 AP002884.2-201ENST00000471647 395 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 AK3P2-201ENST00000507976 429 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 PTP4A1P4-201ENST00000512479 322 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 ACA59.1-201ENST00000515966 143 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 AC010186.2-204ENST00000537668 439 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 AC020661.2-201ENST00000560114 134 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 MIR4474-201ENST00000579189 78 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 AC138627.2-201ENST00000624202 601 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.21□□□□□ -1.9
PTCHD3Q3KNS1 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AC233263.6-201ENST00000631132 1963 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 Y_RNA.326-201ENST00000365176 113 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 RNU1-100P-201ENST00000365255 165 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 U8.8-201ENST00000365399 135 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 Y_RNA.404-201ENST00000383978 102 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-198P-201ENST00000384258 104 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-842P-201ENST00000384269 107 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 SNORA41-201ENST00000384675 132 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 U3.19-201ENST00000390893 196 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AL513475.1-201ENST00000406602 315 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 MIR548P-201ENST00000408336 84 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-174P-201ENST00000410406 106 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AC124916.1-201ENST00000444020 547 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 NIPA2P5-201ENST00000452282 464 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AC133134.1-201ENST00000466800 359 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AP000867.2-201ENST00000532468 320 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AC103996.1-201ENST00000555468 102 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AC099778.2-201ENST00000610904 211 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 AC093010.3-201ENST00000570269 15214 ntBASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
PTCHD3Q3KNS1 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-1317P-201ENST00000364582 104 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-1040P-201ENST00000383974 107 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-474P-201ENST00000384243 107 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 MIR559-201ENST00000385188 96 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 AC245291.1-201ENST00000419501 328 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 HMGN2P20-201ENST00000437531 273 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 CST9LP2-201ENST00000437612 320 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 AC115115.1-201ENST00000449927 248 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 RPL7P42-201ENST00000481005 679 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 AC116655.1-201ENST00000508324 901 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-976P-201ENST00000516086 111 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 RNU6-1213P-201ENST00000517075 94 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 AC093331.1-201ENST00000521474 169 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 IGHV3-76-201ENST00000522465 295 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 HMGN2P15-201ENST00000585707 270 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 SNRPGP17-201ENST00000603780 214 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 MIR8076-201ENST00000611401 83 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 SNORA50A-202ENST00000629536 136 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 MIR3199-2-201ENST00000636243 86 ntBASIC3.19□□□□□ -1.9
PTCHD3Q3KNS1 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 142.7 ms