Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RMST_7.1-201ENST00000621935 268 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 AC002064.3-201ENST00000623448 346 ntBASIC2.85□□□□□ -1.95
COL28A1Q2UY09 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.84□□□□□ -1.95
COL28A1Q2UY09 AC108206.1-201ENST00000570186 4159 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
COL28A1Q2UY09 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
COL28A1Q2UY09 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
COL28A1Q2UY09 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.84□□□□□ -1.95
COL28A1Q2UY09 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 RNU6-1280P-201ENST00000365211 107 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 Y_RNA.530-201ENST00000384587 101 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 AL512633.1-201ENST00000399931 655 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 Y_RNA.615-201ENST00000410769 117 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 USP9YP20-201ENST00000419224 558 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 PGBD4P6-201ENST00000421501 610 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 PTGES3P4-201ENST00000426243 356 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 OSTCP8-201ENST00000445117 448 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.84□□□□□ -1.95
COL28A1Q2UY09 AC092001.1-201ENST00000453012 261 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 AC233279.1-201ENST00000455300 423 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 AL590639.1-201ENST00000456484 337 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 AC007547.1-201ENST00000462177 490 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 AC006483.1-201ENST00000487308 313 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 TRBVA-201ENST00000498804 316 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 AC108210.2-201ENST00000503681 201 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 FAM206BP-201ENST00000510179 541 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 RPL7P20-201ENST00000520308 745 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.84□□□□□ -1.95
COL28A1Q2UY09 AC005261.5-201ENST00000596280 355 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 AC024153.1-201ENST00000603103 365 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 APOOP1-201ENST00000604695 592 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.84□□□□□ -1.95
COL28A1Q2UY09 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
COL28A1Q2UY09 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
COL28A1Q2UY09 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.84□□□□□ -1.96
COL28A1Q2UY09 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
COL28A1Q2UY09 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 RNU6-748P-201ENST00000384648 107 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 MTND1P23-201ENST00000416931 372 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AC009161.1-201ENST00000417306 376 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 NDUFA5P4-201ENST00000436704 385 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 HMGB1P31-201ENST00000437242 427 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 RNU7-138P-201ENST00000459479 64 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AC087884.1-201ENST00000469738 328 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 PRDX4P1-201ENST00000507189 574 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AC008549.1-201ENST00000512900 643 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 SNORA19.2-201ENST00000516013 114 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 RNU6-581P-201ENST00000516214 105 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 RN7SKP282-201ENST00000516824 299 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 RNU6-548P-201ENST00000517083 115 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 COPS8P3-201ENST00000526024 482 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 CR383656.8-201ENST00000549046 145 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 PSMA3P-201ENST00000555485 635 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 DEFB122-202ENST00000569013 197 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 MTCO3P13-201ENST00000577757 781 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AC008739.2-201ENST00000597006 317 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AL355877.2-201ENST00000603670 358 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AL627309.6-201ENST00000606857 840 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 AC107871.2-201ENST00000612894 502 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 UCA1.1-201ENST00000620952 75 ntBASIC2.83□□□□□ -1.96
COL28A1Q2UY09 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
COL28A1Q2UY09 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
COL28A1Q2UY09 HAUS6P2-201ENST00000433254 2404 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 SNORD113-7-201ENST00000363762 77 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 RNU6-19P-201ENST00000384718 107 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 RNU6-482P-201ENST00000391068 107 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 RPL30P16-201ENST00000419341 429 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 ARL5AP4-201ENST00000430731 512 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.82□□□□□ -1.96
COL28A1Q2UY09 RPL39P40-201ENST00000445481 146 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.82□□□□□ -1.96
COL28A1Q2UY09 RNU7-66P-201ENST00000459469 62 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 AC117503.1-201ENST00000472241 394 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 MRPL42P6-201ENST00000486397 371 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.82□□□□□ -1.96
COL28A1Q2UY09 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
COL28A1Q2UY09 RNU6-991P-201ENST00000516168 107 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 ACA59.2-201ENST00000517061 156 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 AC109479.2-201ENST00000517842 174 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 BTF3P12-201ENST00000519620 469 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.82□□□□□ -1.96
COL28A1Q2UY09 AC018638.8-201ENST00000588755 281 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 RPL23AP78-201ENST00000599928 470 ntBASIC2.82□□□□□ -1.96
COL28A1Q2UY09 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms