Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 RNA5SP458-201ENST00000516188 119 ntBASIC2.6□□□□□ -1.99
LIMK1P53667 RNA5SP82-201ENST00000516707 92 ntBASIC2.6□□□□□ -1.99
LIMK1P53667 AP004607.1-201ENST00000524456 203 ntBASIC2.6□□□□□ -1.99
LIMK1P53667 AC004486.1-201ENST00000546846 233 ntBASIC2.6□□□□□ -1.99
LIMK1P53667 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.6□□□□□ -1.99
LIMK1P53667 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.6□□□□□ -1.99
LIMK1P53667 AC009127.3-201ENST00000570531 403 ntBASIC2.6□□□□□ -1.99
LIMK1P53667 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.6□□□□□ -1.99
LIMK1P53667 AC073539.2-201ENST00000597113 165 ntBASIC2.6□□□□□ -1.99
LIMK1P53667 AL670379.10-201ENST00000604330 253 ntBASIC2.6□□□□□ -1.99
LIMK1P53667 AL670379.9-201ENST00000605428 253 ntBASIC2.6□□□□□ -1.99
LIMK1P53667 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC2.6□□□□□ -1.99
LIMK1P53667 U4.3-201ENST00000621047 82 ntBASIC2.6□□□□□ -1.99
LIMK1P53667 AC124864.2-201ENST00000624736 186 ntBASIC2.6□□□□□ -1.99
LIMK1P53667 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
LIMK1P53667 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
LIMK1P53667 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
LIMK1P53667 AL359854.1-201ENST00000614203 1594 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 RNU6-1085P-201ENST00000363576 107 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 RNU6-72P-201ENST00000384285 79 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 RNU6-434P-201ENST00000384376 107 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 MIR512-1-201ENST00000384913 84 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 RNU6-903P-201ENST00000391270 109 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 RAP1BP3-201ENST00000407180 549 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 RNU4-26P-201ENST00000410270 107 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC2.59□□□□□ -1.99
LIMK1P53667 AL353193.1-201ENST00000421444 268 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 AL365400.1-201ENST00000431854 640 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 HMGN2P3-201ENST00000433603 273 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 HMGN2P5-201ENST00000436882 273 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 AC004383.1-201ENST00000438135 289 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 RPL7P54-201ENST00000438336 674 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.59□□□□□ -1.99
LIMK1P53667 AL163973.1-201ENST00000484753 577 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.59□□□□□ -1.99
LIMK1P53667 AC011005.2-201ENST00000487324 359 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 RPL9P6-201ENST00000492764 598 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 SNORA25.11-201ENST00000515935 105 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 RNU1-86P-201ENST00000516108 154 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 Y_RNA.687-201ENST00000516558 91 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 RNU1-107P-201ENST00000516617 154 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 RN7SKP219-201ENST00000516825 296 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.59□□□□□ -1.99
LIMK1P53667 AC135279.1-201ENST00000543493 504 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 MIR3670-2-201ENST00000582974 65 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 MIR3670-1-201ENST00000584160 65 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 MIR3670-3-201ENST00000584855 65 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 AC069294.1-201ENST00000608397 350 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.59□□□□□ -1.99
LIMK1P53667 MIR3670-4-201ENST00000612260 65 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 AL031601.2-202ENST00000622650 282 ntBASIC2.59□□□□□ -1.99
LIMK1P53667 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.59□□□□□ -1.99
LIMK1P53667 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
LIMK1P53667 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
LIMK1P53667 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.58□□□□□ -2
LIMK1P53667 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.58□□□□□ -2
LIMK1P53667 RNU6-552P-201ENST00000362869 119 ntBASIC2.58□□□□□ -2
LIMK1P53667 RNU6-384P-201ENST00000364900 104 ntBASIC2.58□□□□□ -2
LIMK1P53667 MIR27B-201ENST00000385129 97 ntBASIC2.58□□□□□ -2
LIMK1P53667 RNU6-1158P-201ENST00000391167 107 ntBASIC2.58□□□□□ -2
LIMK1P53667 MTCO3P40-201ENST00000392516 676 ntBASIC2.58□□□□□ -2
LIMK1P53667 CYCSP48-201ENST00000417124 323 ntBASIC2.58□□□□□ -2
LIMK1P53667 AC138623.1-201ENST00000418060 216 ntBASIC2.58□□□□□ -2
LIMK1P53667 MORF4L1P6-201ENST00000418771 268 ntBASIC2.58□□□□□ -2
LIMK1P53667 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.58□□□□□ -2
LIMK1P53667 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.58□□□□□ -2
LIMK1P53667 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.58□□□□□ -2
LIMK1P53667 PRPS1P1-201ENST00000445305 876 ntBASIC2.58□□□□□ -2
LIMK1P53667 MTND1P1-201ENST00000445453 368 ntBASIC2.58□□□□□ -2
LIMK1P53667 RPL7P12-201ENST00000446719 750 ntBASIC2.58□□□□□ -2
LIMK1P53667 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC2.58□□□□□ -2
LIMK1P53667 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.58□□□□□ -2
LIMK1P53667 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.58□□□□□ -2
LIMK1P53667 AC090525.1-201ENST00000479116 478 ntBASIC2.58□□□□□ -2
LIMK1P53667 MTND2P33-201ENST00000506452 1031 ntBASIC2.58□□□□□ -2
LIMK1P53667 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.58□□□□□ -2
LIMK1P53667 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.58□□□□□ -2
LIMK1P53667 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.58□□□□□ -2
LIMK1P53667 RNA5SP112-201ENST00000515937 99 ntBASIC2.58□□□□□ -2
LIMK1P53667 AP003034.1-201ENST00000534621 422 ntBASIC2.58□□□□□ -2
LIMK1P53667 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.58□□□□□ -2
LIMK1P53667 MYL12BP1-201ENST00000569826 507 ntBASIC2.58□□□□□ -2
LIMK1P53667 MIR1273D-201ENST00000577266 86 ntBASIC2.58□□□□□ -2
LIMK1P53667 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.58□□□□□ -2
LIMK1P53667 AP001596.2-201ENST00000608410 312 ntBASIC2.58□□□□□ -2
LIMK1P53667 Z82243.1-201ENST00000609432 473 ntBASIC2.58□□□□□ -2
LIMK1P53667 AC015540.1-201ENST00000615828 501 ntBASIC2.58□□□□□ -2
LIMK1P53667 SCARNA4-202ENST00000625402 129 ntBASIC2.58□□□□□ -2
LIMK1P53667 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.58□□□□□ -2
LIMK1P53667 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.58□□□□□ -2
LIMK1P53667 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.57□□□□□ -2
LIMK1P53667 AL109809.4-201ENST00000603520 2185 ntBASIC2.57□□□□□ -2
LIMK1P53667 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.57□□□□□ -2
LIMK1P53667 AC092593.1-201ENST00000515413 1815 ntBASIC2.57□□□□□ -2
LIMK1P53667 AL139276.1-201ENST00000311910 1001 ntBASIC2.57□□□□□ -2
LIMK1P53667 Y_RNA.481-201ENST00000384373 102 ntBASIC2.57□□□□□ -2
LIMK1P53667 AL606923.1-201ENST00000406616 190 ntBASIC2.57□□□□□ -2
LIMK1P53667 AF274854.1-201ENST00000413236 615 ntBASIC2.57□□□□□ -2
LIMK1P53667 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms