Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MIR5692A1-201ENST00000580523 69 ntBASIC3.05□□□□□ -1.92
CTCFP49711 MIR4424-201ENST00000585257 86 ntBASIC3.05□□□□□ -1.92
CTCFP49711 AC090517.2-201ENST00000614966 680 ntBASIC3.05□□□□□ -1.92
CTCFP49711 UCA1.1-201ENST00000620952 75 ntBASIC3.05□□□□□ -1.92
CTCFP49711 MIR1321-201ENST00000637766 79 ntBASIC3.05□□□□□ -1.92
CTCFP49711 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
CTCFP49711 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.05□□□□□ -1.92
CTCFP49711 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CTCFP49711 AC093536.2-201ENST00000565257 1406 ntBASIC3.04□□□□□ -1.92
CTCFP49711 SNORD62.1-201ENST00000362541 86 ntBASIC3.04□□□□□ -1.92
CTCFP49711 RNU6-1090P-201ENST00000364065 94 ntBASIC3.04□□□□□ -1.92
CTCFP49711 RNU6-384P-201ENST00000364900 104 ntBASIC3.04□□□□□ -1.92
CTCFP49711 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CTCFP49711 MIR181A2-201ENST00000384863 110 ntBASIC3.04□□□□□ -1.92
CTCFP49711 SNORA16.2-201ENST00000390991 127 ntBASIC3.04□□□□□ -1.92
CTCFP49711 AL356057.2-201ENST00000403318 432 ntBASIC3.04□□□□□ -1.92
CTCFP49711 RNU6-908P-201ENST00000410160 94 ntBASIC3.04□□□□□ -1.92
CTCFP49711 RNU2-25P-201ENST00000411041 191 ntBASIC3.04□□□□□ -1.92
CTCFP49711 AL451074.5-201ENST00000415894 435 ntBASIC3.04□□□□□ -1.92
CTCFP49711 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.04□□□□□ -1.92
CTCFP49711 SCARNA18-201ENST00000459004 134 ntBASIC3.04□□□□□ -1.92
CTCFP49711 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.04□□□□□ -1.92
CTCFP49711 MTND3P25-201ENST00000509243 135 ntBASIC3.04□□□□□ -1.92
CTCFP49711 RNU6-1281P-201ENST00000516223 105 ntBASIC3.04□□□□□ -1.92
CTCFP49711 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.04□□□□□ -1.92
CTCFP49711 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.04□□□□□ -1.92
CTCFP49711 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.04□□□□□ -1.92
CTCFP49711 MIR6134-201ENST00000617606 109 ntBASIC3.04□□□□□ -1.92
CTCFP49711 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
CTCFP49711 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.04□□□□□ -1.92
CTCFP49711 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CTCFP49711 AC027514.1-201ENST00000588561 1603 ntBASIC3.04□□□□□ -1.92
CTCFP49711 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
CTCFP49711 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CTCFP49711 SNORA64-201ENST00000384674 134 ntBASIC3.03□□□□□ -1.92
CTCFP49711 MIR627-201ENST00000384979 97 ntBASIC3.03□□□□□ -1.92
CTCFP49711 CIR1P3-201ENST00000405137 479 ntBASIC3.03□□□□□ -1.92
CTCFP49711 RNU2-3P-201ENST00000410144 191 ntBASIC3.03□□□□□ -1.92
CTCFP49711 AL627311.1-201ENST00000431514 115 ntBASIC3.03□□□□□ -1.92
CTCFP49711 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.03□□□□□ -1.92
CTCFP49711 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.03□□□□□ -1.92
CTCFP49711 CCDC34P1-201ENST00000507441 517 ntBASIC3.03□□□□□ -1.92
CTCFP49711 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.03□□□□□ -1.92
CTCFP49711 AC011352.1-201ENST00000512300 793 ntBASIC3.03□□□□□ -1.92
CTCFP49711 LRRC34P2-201ENST00000514850 553 ntBASIC3.03□□□□□ -1.92
CTCFP49711 RNA5SP401-201ENST00000515920 127 ntBASIC3.03□□□□□ -1.92
CTCFP49711 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.03□□□□□ -1.92
CTCFP49711 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.03□□□□□ -1.92
CTCFP49711 HPRT1P3-201ENST00000539521 576 ntBASIC3.03□□□□□ -1.92
CTCFP49711 AC006199.1-201ENST00000548728 219 ntBASIC3.03□□□□□ -1.92
CTCFP49711 MTCO3P23-201ENST00000561363 289 ntBASIC3.03□□□□□ -1.92
CTCFP49711 AL138976.2-201ENST00000563989 694 ntBASIC3.03□□□□□ -1.92
CTCFP49711 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.03□□□□□ -1.92
CTCFP49711 LRRC37A5P-203ENST00000580181 585 ntBASIC3.03□□□□□ -1.92
CTCFP49711 MIR3616-201ENST00000584070 92 ntBASIC3.03□□□□□ -1.92
CTCFP49711 AL162413.1-201ENST00000603198 110 ntBASIC3.03□□□□□ -1.92
CTCFP49711 AP000787.2-201ENST00000604432 568 ntBASIC3.03□□□□□ -1.92
CTCFP49711 RMST_4.1-201ENST00000616886 107 ntBASIC3.03□□□□□ -1.92
CTCFP49711 U6.42-201ENST00000618440 107 ntBASIC3.03□□□□□ -1.92
CTCFP49711 AC004520.1-201ENST00000608362 1413 ntBASIC3.02□□□□□ -1.93
CTCFP49711 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
CTCFP49711 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
CTCFP49711 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CTCFP49711 CDC27P3-201ENST00000635418 1910 ntBASIC3.02□□□□□ -1.93
CTCFP49711 AL356292.1-201ENST00000283110 373 ntBASIC3.02□□□□□ -1.93
CTCFP49711 Y_RNA.9-201ENST00000362354 101 ntBASIC3.02□□□□□ -1.93
CTCFP49711 Y_RNA.450-201ENST00000384198 113 ntBASIC3.02□□□□□ -1.93
CTCFP49711 SNORD70.1-201ENST00000391007 85 ntBASIC3.02□□□□□ -1.93
CTCFP49711 AL590004.2-201ENST00000404787 371 ntBASIC3.02□□□□□ -1.93
CTCFP49711 RNU6-607P-201ENST00000411283 108 ntBASIC3.02□□□□□ -1.93
CTCFP49711 FCF1P9-201ENST00000412546 282 ntBASIC3.02□□□□□ -1.93
CTCFP49711 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.02□□□□□ -1.93
CTCFP49711 ZNF885P-201ENST00000420174 1098 ntBASIC3.02□□□□□ -1.93
CTCFP49711 RPL7P37-201ENST00000425095 738 ntBASIC3.02□□□□□ -1.93
CTCFP49711 USP9YP18-201ENST00000425912 695 ntBASIC3.02□□□□□ -1.93
CTCFP49711 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.02□□□□□ -1.93
CTCFP49711 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.02□□□□□ -1.93
CTCFP49711 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.02□□□□□ -1.93
CTCFP49711 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.02□□□□□ -1.93
CTCFP49711 AC011005.2-201ENST00000487324 359 ntBASIC3.02□□□□□ -1.93
CTCFP49711 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CTCFP49711 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.02□□□□□ -1.93
CTCFP49711 RNU2-69P-201ENST00000516061 100 ntBASIC3.02□□□□□ -1.93
CTCFP49711 SCARNA11.3-201ENST00000517276 130 ntBASIC3.02□□□□□ -1.93
CTCFP49711 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.02□□□□□ -1.93
CTCFP49711 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
CTCFP49711 LINC00933-203ENST00000559812 219 ntBASIC3.02□□□□□ -1.93
CTCFP49711 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.02□□□□□ -1.93
CTCFP49711 AC136619.2-201ENST00000563361 631 ntBASIC3.02□□□□□ -1.93
CTCFP49711 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.02□□□□□ -1.93
CTCFP49711 AL645944.1-201ENST00000603857 493 ntBASIC3.02□□□□□ -1.93
CTCFP49711 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
CTCFP49711 AL020991.1-201ENST00000612314 373 ntBASIC3.02□□□□□ -1.93
CTCFP49711 YWHAEP7-203ENST00000622054 312 ntBASIC3.02□□□□□ -1.93
CTCFP49711 AP003400.5-201ENST00000624827 617 ntBASIC3.02□□□□□ -1.93
CTCFP49711 MIR3199-2-201ENST00000636243 86 ntBASIC3.02□□□□□ -1.93
CTCFP49711 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CTCFP49711 MTND4P14-201ENST00000435799 1354 ntBASIC3.01□□□□□ -1.93
CTCFP49711 MTND4P5-201ENST00000435821 1374 ntBASIC3.01□□□□□ -1.93
CTCFP49711 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms