Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.17□□□□□ -1.9
CIITAP33076 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.17□□□□□ -1.9
CIITAP33076 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.17□□□□□ -1.9
CIITAP33076 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.17□□□□□ -1.9
CIITAP33076 MIR5692A1-201ENST00000580523 69 ntBASIC3.17□□□□□ -1.9
CIITAP33076 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.17□□□□□ -1.9
CIITAP33076 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.17□□□□□ -1.9
CIITAP33076 AC007938.3-201ENST00000604965 623 ntBASIC3.17□□□□□ -1.9
CIITAP33076 AC016727.1-205ENST00000605437 569 ntBASIC3.17□□□□□ -1.9
CIITAP33076 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.17□□□□□ -1.9
CIITAP33076 ZNF519P1-201ENST00000449011 1626 ntBASIC3.17□□□□□ -1.9
CIITAP33076 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.17□□□□□ -1.9
CIITAP33076 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.17□□□□□ -1.9
CIITAP33076 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
CIITAP33076 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
CIITAP33076 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
CIITAP33076 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.16□□□□□ -1.9
CIITAP33076 AC138393.1-203ENST00000327086 343 ntBASIC3.16□□□□□ -1.9
CIITAP33076 Y_RNA.33-201ENST00000362591 102 ntBASIC3.16□□□□□ -1.9
CIITAP33076 SNORD116-29-201ENST00000384516 83 ntBASIC3.16□□□□□ -1.9
CIITAP33076 RNU6-1179P-201ENST00000384667 107 ntBASIC3.16□□□□□ -1.9
CIITAP33076 AL031121.1-201ENST00000406553 254 ntBASIC3.16□□□□□ -1.9
CIITAP33076 RN7SKP158-201ENST00000410453 326 ntBASIC3.16□□□□□ -1.9
CIITAP33076 RNU6-1025P-201ENST00000410629 104 ntBASIC3.16□□□□□ -1.9
CIITAP33076 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.16□□□□□ -1.9
CIITAP33076 AC087499.2-201ENST00000432861 149 ntBASIC3.16□□□□□ -1.9
CIITAP33076 AC025750.2-201ENST00000442609 450 ntBASIC3.16□□□□□ -1.9
CIITAP33076 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.16□□□□□ -1.9
CIITAP33076 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC3.16□□□□□ -1.9
CIITAP33076 RPS29P12-201ENST00000460178 152 ntBASIC3.16□□□□□ -1.9
CIITAP33076 AL049873.1-201ENST00000480540 376 ntBASIC3.16□□□□□ -1.9
CIITAP33076 AC008526.1-201ENST00000509149 338 ntBASIC3.16□□□□□ -1.9
CIITAP33076 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.16□□□□□ -1.9
CIITAP33076 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.16□□□□□ -1.9
CIITAP33076 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.16□□□□□ -1.9
CIITAP33076 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC3.16□□□□□ -1.9
CIITAP33076 MIR4506-201ENST00000584693 77 ntBASIC3.16□□□□□ -1.9
CIITAP33076 APOOP1-201ENST00000604695 592 ntBASIC3.16□□□□□ -1.9
CIITAP33076 MIR7106-201ENST00000612419 65 ntBASIC3.16□□□□□ -1.9
CIITAP33076 RMST_4.1-201ENST00000616886 107 ntBASIC3.16□□□□□ -1.9
CIITAP33076 AL359693.1-201ENST00000614959 2407 ntBASIC3.16□□□□□ -1.9
CIITAP33076 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
CIITAP33076 MTND5P7-201ENST00000413558 1798 ntBASIC3.15□□□□□ -1.9
CIITAP33076 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
CIITAP33076 RNU6-7-201ENST00000364784 107 ntBASIC3.15□□□□□ -1.91
CIITAP33076 RNU6-8-201ENST00000365467 107 ntBASIC3.15□□□□□ -1.91
CIITAP33076 RNU6-395P-201ENST00000365662 106 ntBASIC3.15□□□□□ -1.91
CIITAP33076 Y_RNA.387-201ENST00000383918 102 ntBASIC3.15□□□□□ -1.91
CIITAP33076 RNA5SP354-201ENST00000391247 136 ntBASIC3.15□□□□□ -1.91
CIITAP33076 AL360182.1-201ENST00000397433 468 ntBASIC3.15□□□□□ -1.91
CIITAP33076 AL138827.1-201ENST00000402666 306 ntBASIC3.15□□□□□ -1.91
CIITAP33076 AC099548.1-201ENST00000421443 426 ntBASIC3.15□□□□□ -1.91
CIITAP33076 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.15□□□□□ -1.91
CIITAP33076 AC007677.1-201ENST00000445757 515 ntBASIC3.15□□□□□ -1.91
CIITAP33076 AC003982.1-202ENST00000469928 248 ntBASIC3.15□□□□□ -1.91
CIITAP33076 AC011005.2-201ENST00000487324 359 ntBASIC3.15□□□□□ -1.91
CIITAP33076 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.15□□□□□ -1.91
CIITAP33076 HMGN1P13-201ENST00000505795 138 ntBASIC3.15□□□□□ -1.91
CIITAP33076 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.15□□□□□ -1.91
CIITAP33076 RNU6-143P-201ENST00000516942 93 ntBASIC3.15□□□□□ -1.91
CIITAP33076 RNA5SP165-201ENST00000517142 115 ntBASIC3.15□□□□□ -1.91
CIITAP33076 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.15□□□□□ -1.91
CIITAP33076 AC025755.1-201ENST00000521306 278 ntBASIC3.15□□□□□ -1.91
CIITAP33076 AP005597.4-201ENST00000526762 229 ntBASIC3.15□□□□□ -1.91
CIITAP33076 FRG2DP-202ENST00000566967 323 ntBASIC3.15□□□□□ -1.91
CIITAP33076 AC138761.3-201ENST00000579993 334 ntBASIC3.15□□□□□ -1.91
CIITAP33076 AC004805.2-201ENST00000605382 482 ntBASIC3.15□□□□□ -1.91
CIITAP33076 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.15□□□□□ -1.91
CIITAP33076 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.15□□□□□ -1.91
CIITAP33076 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CIITAP33076 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.14□□□□□ -1.91
CIITAP33076 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.14□□□□□ -1.91
CIITAP33076 FTLP6-201ENST00000355274 422 ntBASIC3.14□□□□□ -1.91
CIITAP33076 MIR26A1-201ENST00000362205 77 ntBASIC3.14□□□□□ -1.91
CIITAP33076 RNU6-270P-201ENST00000364131 105 ntBASIC3.14□□□□□ -1.91
CIITAP33076 RNU1-112P-201ENST00000364401 164 ntBASIC3.14□□□□□ -1.91
CIITAP33076 Y_RNA.460-201ENST00000384255 102 ntBASIC3.14□□□□□ -1.91
CIITAP33076 Y_RNA.480-201ENST00000384364 102 ntBASIC3.14□□□□□ -1.91
CIITAP33076 RNU6-140P-201ENST00000384566 108 ntBASIC3.14□□□□□ -1.91
CIITAP33076 MIR9-1-201ENST00000385198 89 ntBASIC3.14□□□□□ -1.91
CIITAP33076 U3.26-201ENST00000391236 204 ntBASIC3.14□□□□□ -1.91
CIITAP33076 MIR888-201ENST00000401186 77 ntBASIC3.14□□□□□ -1.91
CIITAP33076 RNA5SP21-201ENST00000410917 96 ntBASIC3.14□□□□□ -1.91
CIITAP33076 AL590632.1-201ENST00000424289 371 ntBASIC3.14□□□□□ -1.91
CIITAP33076 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.14□□□□□ -1.91
CIITAP33076 FABP5P14-201ENST00000437273 393 ntBASIC3.14□□□□□ -1.91
CIITAP33076 AL714022.1-201ENST00000439897 151 ntBASIC3.14□□□□□ -1.91
CIITAP33076 FTH1P25-201ENST00000447665 469 ntBASIC3.14□□□□□ -1.91
CIITAP33076 SNORD19B-201ENST00000459623 84 ntBASIC3.14□□□□□ -1.91
CIITAP33076 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.14□□□□□ -1.91
CIITAP33076 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.14□□□□□ -1.91
CIITAP33076 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC3.14□□□□□ -1.91
CIITAP33076 RNU6-1332P-201ENST00000516666 104 ntBASIC3.14□□□□□ -1.91
CIITAP33076 RNU6-323P-201ENST00000521915 107 ntBASIC3.14□□□□□ -1.91
CIITAP33076 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
CIITAP33076 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC3.14□□□□□ -1.91
CIITAP33076 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.14□□□□□ -1.91
CIITAP33076 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC3.14□□□□□ -1.91
CIITAP33076 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.14□□□□□ -1.91
CIITAP33076 GTF3AP2-201ENST00000557014 266 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms