| TFE3 | P19532 | Y_RNA.504-201 | ENST00000384481 | 104 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU4-70P-201 | ENST00000384579 | 139 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MIR544A-201 | ENST00000384855 | 91 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MIR215-201 | ENST00000384858 | 110 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL079342.1-201 | ENST00000401460 | 267 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RN7SKP61-201 | ENST00000410642 | 295 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU2-37P-201 | ENST00000410695 | 177 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | LINC02331-201 | ENST00000418927 | 602 nt | TSL 5 BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | UTS2B-203 | ENST00000427544 | 676 nt | APPRIS P1 TSL 1 (best) BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | EIF1P2-201 | ENST00000428233 | 350 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RPS15AP7-201 | ENST00000439294 | 405 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC034223.1-201 | ENST00000511054 | 599 nt | TSL 3 BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU6-1198P-201 | ENST00000516904 | 67 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | SNORA31.23-201 | ENST00000517219 | 133 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | HSPE1P4-201 | ENST00000550617 | 308 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL391261.3-201 | ENST00000557194 | 520 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RN7SL703P-201 | ENST00000578485 | 302 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MIR6875-201 | ENST00000617506 | 72 nt | BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MCF2-202 | ENST00000370573 | 2583 nt | APPRIS ALT2 TSL 1 (best) BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RAPGEF6-210 | ENST00000512052 | 3535 nt | TSL 2 BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | HERC5-203 | ENST00000508159 | 2243 nt | TSL 2 BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | ABI3BP-206 | ENST00000471714 | 6783 nt | APPRIS ALT2 TSL 5 BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | VPS13A-206 | ENST00000376646 | 2262 nt | TSL 5 BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | NLGN1-206 | ENST00000457714 | 8242 nt | APPRIS P1 TSL 1 (best) BASIC | 4.11 | □□□□□ -1.75 | | |
| TFE3 | P19532 | GALNT1-201 | ENST00000269195 | 3847 nt | APPRIS P1 TSL 1 (best) BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | LRRN3-203 | ENST00000422987 | 3513 nt | APPRIS P1 TSL 1 (best) BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | ERICH3-AS1-202 | ENST00000612390 | 4874 nt | TSL 1 (best) BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU5B-2P-201 | ENST00000363036 | 113 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | Y_RNA.352-201 | ENST00000365439 | 102 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL591034.1-201 | ENST00000407447 | 340 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MIR1251-201 | ENST00000408552 | 70 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC118345.1-201 | ENST00000411785 | 366 nt | TSL 3 BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL132875.2-201 | ENST00000436418 | 325 nt | TSL 5 BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | GPM6BP3-201 | ENST00000442797 | 145 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RPS29P20-201 | ENST00000489592 | 171 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC095059.1-201 | ENST00000502570 | 349 nt | TSL 5 BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | LINC02233-201 | ENST00000513718 | 358 nt | TSL 3 BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU5F-8P-201 | ENST00000515941 | 111 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RGS5-206 | ENST00000527988 | 373 nt | TSL 1 (best) BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC120057.2-201 | ENST00000571520 | 271 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MIR3160-1-201 | ENST00000577972 | 85 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MIR5571-201 | ENST00000577998 | 113 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AL138963.2-201 | ENST00000605137 | 226 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | LINC01206-214 | ENST00000610910 | 456 nt | TSL 5 BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MIR6076-201 | ENST00000617521 | 113 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MIR4727-201 | ENST00000622232 | 55 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MIR3199-2-201 | ENST00000636243 | 86 nt | BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | DST-201 | ENST00000244364 | 16742 nt | TSL 1 (best) BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | CNOT4-202 | ENST00000356162 | 2594 nt | TSL 5 BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | FAM208A-202 | ENST00000431842 | 7119 nt | TSL 1 (best) BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | POU2F1-204 | ENST00000367866 | 13905 nt | APPRIS P3 TSL 1 (best) BASIC | 4.1 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC018555.1-201 | ENST00000567548 | 1980 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | DOCK7-219 | ENST00000635253 | 6423 nt | APPRIS ALT2 TSL 5 BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | MYOT-201 | ENST00000239926 | 2337 nt | APPRIS P1 TSL 1 (best) BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | EMSY-215 | ENST00000533248 | 3798 nt | TSL 1 (best) BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC092268.1-201 | ENST00000342691 | 405 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU6-1159P-201 | ENST00000362933 | 107 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU6-487P-201 | ENST00000365430 | 104 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | Y_RNA.581-201 | ENST00000391017 | 97 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC092017.2-201 | ENST00000427600 | 362 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC078809.1-201 | ENST00000427601 | 140 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC002465.1-201 | ENST00000436097 | 349 nt | TSL 2 BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | HMGB1P37-201 | ENST00000439613 | 609 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | LINC01162-201 | ENST00000447262 | 447 nt | TSL 5 BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | SNRPGP7-201 | ENST00000469016 | 106 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AP000870.1-201 | ENST00000472927 | 406 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | PPIAP15-201 | ENST00000479662 | 484 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RN7SL271P-201 | ENST00000487601 | 295 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | HMGB3P17-201 | ENST00000504195 | 649 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC116563.1-201 | ENST00000505454 | 396 nt | TSL 3 BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU6-581P-201 | ENST00000516214 | 105 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | RNU6-111P-201 | ENST00000517179 | 105 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | DEFB108E-201 | ENST00000524692 | 240 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AC021231.3-201 | ENST00000558497 | 370 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | LINC00901.1-201 | ENST00000617252 | 152 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | Xist_exon1.1-201 | ENST00000618930 | 85 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | SNORA43.4-201 | ENST00000629559 | 138 nt | BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | STAU2-207 | ENST00000519961 | 3928 nt | TSL 1 (best) BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AJ009632.2-204 | ENST00000635621 | 1401 nt | TSL 5 BASIC | 4.09 | □□□□□ -1.75 | | |
| TFE3 | P19532 | AF117829.1-206 | ENST00000621883 | 3802 nt | BASIC | 4.09 | □□□□□ -1.76 | | |
| TFE3 | P19532 | PLCL2-202 | ENST00000432376 | 3940 nt | APPRIS P3 TSL 1 (best) BASIC | 4.09 | □□□□□ -1.76 | | |
| TFE3 | P19532 | AC093274.1-201 | ENST00000503488 | 5454 nt | TSL 5 BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | KCNJ16-209 | ENST00000589377 | 3684 nt | APPRIS P1 TSL 5 BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | GABRG2-208 | ENST00000638552 | 3710 nt | TSL 5 BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | STXBP4-201 | ENST00000376352 | 15590 nt | APPRIS P1 TSL 2 BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | SNORD27-201 | ENST00000363981 | 72 nt | BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | RNU6-200P-201 | ENST00000364743 | 107 nt | BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | RNA5SP390-201 | ENST00000410191 | 113 nt | BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | AL590135.1-201 | ENST00000422215 | 156 nt | BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | RPL23AP82-202 | ENST00000427528 | 469 nt | BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | AL138900.1-201 | ENST00000449345 | 399 nt | TSL 3 BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | AC010891.1-201 | ENST00000449963 | 448 nt | TSL 2 BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | SSXP4-201 | ENST00000451349 | 245 nt | BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | RPS4XP22-201 | ENST00000480755 | 780 nt | BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | RPL32P34-201 | ENST00000486380 | 400 nt | BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | RNU6-1338P-201 | ENST00000516328 | 91 nt | BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | AP003123.1-201 | ENST00000526041 | 333 nt | TSL 2 BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | AC006199.1-201 | ENST00000548728 | 219 nt | BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | AC023824.2-201 | ENST00000566185 | 400 nt | BASIC | 4.08 | □□□□□ -1.76 | | |
| TFE3 | P19532 | AL109918.3-201 | ENST00000603072 | 338 nt | BASIC | 4.08 | □□□□□ -1.76 | | |